| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5071 |
|---|
| Symbol | |
|---|
| ID | 8336425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5822680 |
|---|
| End bp | 5824170 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644958170 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003115772 |
|---|
| Protein GI | 256394208 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0267103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCC TGCCGCACCT TCTCGCCACG CGAGCCGCCG CCGAACCGGA GCGTCTCGCC
TTGATCGTCG ACGGGGTCGG TTCGCTCACG ATCGGGGACT GGGAGACACG TTCGGACGCG
GTCGCGCACG CCGTTCTACG GCGCGGGCTC CGCCTCGGCG ATCGTGTGGG ACTGCTGTTC
GGCAGCCGGA ACTGGATCGA CTACGCGATC TGCTTCCTGG GCGTGCAGAA GGCCGGCGGA
GTGGCGGTAC CGTTGCCGCC CCGGGCGCCC GCCGCCGAGC TCACCCGGCT GCTGACCGAC
TGCGCCGCCT CCGGTCTCCT CCATGAAGAT GCCAGCCAGC CCGCTCCGTT CGACGGCTGG
TCGGCGAGCG TGTCAGAGCT CGAAGAAGCC GCTGCCGGAG ACGATCAGGG CCCGGTGGAC
ATCGAGGTCC GGCCCGGCGA TCTGGCGCAG ATCCTCTACA CCTCAGGCAC GACCGGCCGA
CCCAAAGGCG TCGCGGCGAC GCACGCGAAC CTGACGCACG GCTGCGGCGG ACGTCGGCGC
CCCTTCGCGC ACTCCCGCCA CCTGGCGCAC GCCTTCCCGA TCGGCACGAA CGCCGGTCAG
GTGATGCTCG TCAACGCCCT CGACGCCCGG CTCGCCGTGC TCAGTCCGGC TCGCTTCACT
CCGGCTCGCT TCGCGCGGAT GATCCAGGAA TACGCAGCCG GGACGGTCTT CCTCGTCCCG
GCGATGGCTG TCGAACTGCT CGCCGGTGGG AGCCTGGAGA AGTACGACCT GTCCAGCGTG
GTGCTGCTGG GATCGGCGGC GGCTCCGTTG CCCGGCGCGG TCGCCGGGAA GCTGGTGAAG
GCGTTCCCGA ACGCGACGAT CGCGAACTAC TACACCTCCA CCGAGGCGGC ACCGGCGCAG
ACCGTGATGC TGTACGACCC GACTCGGCCC GGAAGCGTGG GGCGTGCTCT GGCAGGTGGC
GCGGTACGGA TCGCGGCGTC CGGATCCGGG GCGCCGGTCG AGGCCGGACA GATCGCGCCG
GTGGATGAGG TCGGTGAGGT GTGGCTGCGC TCGCCGACGG TTTCCCGCAC GTACTACGGC
GACGCCGAGT CCAGCCGCGA GGTGTTCCAC AGTGGCTGGA TCCGTATGGG AGACCTCGGA
TATGTCGATG CGGACGGCTA CCTCTACCTC GTGGACCGCG ACGGCGATCT GGTGAAGTCG
GGAGCCTTCA AGGTCTCCAC GCTTCGGGTC GAAGAAGCGC TCTATGAGCA CCCTGATGTG
CTCGAGGCGG CCGTCGTCGG CCTGCCGCAT CCCTCGCTGG GCAAGGCACT GGCCGCCGTG
GTAGTGCCGC GCGAGCCGGT CCCGGCCGAG CAGCTGCGGG AGTTCTTGTT GGAACGGCTC
GCCCCGCACG AGGTGCCCAG CGTCATCGTC GAGGCCGAGG CGCTGCCTCG CAACGCCGGC
GGCAAAGTGG ACAAGCGCGC CCTGCTGAAG GAGTCGACAT GGCCGACATG A
|
|---|
| Protein sequence | MTTLPHLLAT RAAAEPERLA LIVDGVGSLT IGDWETRSDA VAHAVLRRGL RLGDRVGLLF
GSRNWIDYAI CFLGVQKAGG VAVPLPPRAP AAELTRLLTD CAASGLLHED ASQPAPFDGW
SASVSELEEA AAGDDQGPVD IEVRPGDLAQ ILYTSGTTGR PKGVAATHAN LTHGCGGRRR
PFAHSRHLAH AFPIGTNAGQ VMLVNALDAR LAVLSPARFT PARFARMIQE YAAGTVFLVP
AMAVELLAGG SLEKYDLSSV VLLGSAAAPL PGAVAGKLVK AFPNATIANY YTSTEAAPAQ
TVMLYDPTRP GSVGRALAGG AVRIAASGSG APVEAGQIAP VDEVGEVWLR SPTVSRTYYG
DAESSREVFH SGWIRMGDLG YVDADGYLYL VDRDGDLVKS GAFKVSTLRV EEALYEHPDV
LEAAVVGLPH PSLGKALAAV VVPREPVPAE QLREFLLERL APHEVPSVIV EAEALPRNAG
GKVDKRALLK ESTWPT
|
|---|
| |