| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5027 |
|---|
| Symbol | |
|---|
| ID | 8336381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5758340 |
|---|
| End bp | 5759644 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644958126 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003115728 |
|---|
| Protein GI | 256394164 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0894368 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.625584 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCACA CGCTTCCCTC CGCTAGATCG ACCCGGTTGC TCGCGGCATG CCTGGCCGCG
GGGATCTCGC TCGCCGGGTG TTCGGCGGCG ACCTCCAGCA GCTCCAAGAG CAGCGGCTCC
GGCTCGGCGT CGCTGTCCTA CCTGACGTTC GAGACTCCGA GCCTGACCGC CTCGTTCTGG
GACACCTCGA TAGCCAGCGG TGAGAAGGCG GTCCCCGGCG TCACGATCAA GAAGCTGGTC
TCGCCGAGCA CCGACCGCGA CGCCTACGCC AAGCAGCTGC AGGCCTCCGG GCAGTTCCCG
GACCTGCTGC AGTCGATCAC GCCGTCCACC TTCGTACAGG CCGGGCTGCT CAAGCCCTAC
GACCAGAGCT GGGTGAACGC CAACTTCCTG CTCCCGATGG GCAACGCCTA CAAGGGCAAG
GTCTACATCC CGCCGACCAA CTCCCAGATC ATCCCGATGG TCTTCTACAA CAAGACGATG
TTCGCCAAGG CGGGCATCGC CAGTGCGCCG AAGACGTGGG CGGACTTCAT GGCCGACTGC
GCCAAGCTCA AGGCGGCCGG CATGACGCCG ATCGAGCTCG GCGGCGGCGA CCCGTTCGCG
GCCTCGATGC CGCTGACCGG GATCCTGTCG GCGGACGTGC TCGGCAAGGA CCCGAACTGG
CTGCAGGAAC GCTACGCGGG CAAGGTCAAG TTCACCGACG CGAACGTCGA GACCGCGGTC
GCCAAGTACC GGACGATGGC CAAGAACGGG TACTTCGAGG ACGGCGCGCT GGGCGTGAAG
TACGCCGACT CCATCACGAA CTTCACCTCC GGCAAGGCCG CGATGTACAT GATGGGCAGC
TGGTTCCTCG GCTCGGTGCC CAAGGACCAC GCCGACGACT TCGGCTCCTT CATGACCCCC
ACCGACGACG GCTCCCTGGT GGTGCCGTTC TCGGTCGGGG GCTCGATGGC GATCAGCGCG
AAGACCCCGG CGCCGGACAA GGCGACCGCG TTCGCCGAGG CCTGGTCCAC CGACCCGGCG
AACCTGAAGA CCCTGATCGA GGGCGACGGT GCGTTCCCGA TGCTCAAGGG CAAGACCCTG
GCCGACTACA ACGTGACCGT GACGCAGGTG TTCAAGGACT CCTATGCCTA CGTCACGGAC
AAGAACACGA AGGTCTCCTC GATCGGGTGG GCGACCAACG ACGACTCCAT GCCCTCGGGT
CTGAACGACG CCTACTACGC GGCCAGCCAG GCTCTGTTCA CCTCCGACGA CGTCGCGGGT
CAGATGGCCA AGCTCGACTC CGCGTGGAAC GCGGCGACCA AGTGA
|
|---|
| Protein sequence | MRHTLPSARS TRLLAACLAA GISLAGCSAA TSSSSKSSGS GSASLSYLTF ETPSLTASFW
DTSIASGEKA VPGVTIKKLV SPSTDRDAYA KQLQASGQFP DLLQSITPST FVQAGLLKPY
DQSWVNANFL LPMGNAYKGK VYIPPTNSQI IPMVFYNKTM FAKAGIASAP KTWADFMADC
AKLKAAGMTP IELGGGDPFA ASMPLTGILS ADVLGKDPNW LQERYAGKVK FTDANVETAV
AKYRTMAKNG YFEDGALGVK YADSITNFTS GKAAMYMMGS WFLGSVPKDH ADDFGSFMTP
TDDGSLVVPF SVGGSMAISA KTPAPDKATA FAEAWSTDPA NLKTLIEGDG AFPMLKGKTL
ADYNVTVTQV FKDSYAYVTD KNTKVSSIGW ATNDDSMPSG LNDAYYAASQ ALFTSDDVAG
QMAKLDSAWN AATK
|
|---|
| |