| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4988 |
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| Symbol | |
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| ID | 8336342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 5705954 |
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| End bp | 5707543 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644958087 |
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| Product | Berberine/berberine domain protein |
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| Protein accession | YP_003115689 |
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| Protein GI | 256394125 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.332344 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00488458 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTACCC CGTCTGCGAG CAGCGGTTCG CGTCCCCTCG TGCTCAGCGA TCGGCAAGGG
TTCAATCGGC GCTGGTTCGC GCCGAAGCTC GAGGCGGTTT ATGTGCCCAG GAATGATGAT
GAGGCGGTCG CGCAAGTCGG CGAAGCCGTC TCGCGTTATG GGCGCGATGT CAAGGTTGTG
GCTGGGCGCC ACTGCTATGA GAACTTCGTT TACAACGACA CCACTAGGGC CGTCGTGGAT
ATGTCTTCGA TGACCCGGGT CGGCTGGGAT GGAGGGCGGG GTGCTTTCTT CGTTGAGGCT
GGTTGTGAGA ACTGGTCGGT CTACCGGACC TTGCTGAACG GCTACAACAA GACCCTTCCC
GCAGGAAGCT GCTACTCGGT CGGCGCCGGG GGGCACATCA CCGGCGGCGG GTACGGTCTG
CTGTCGCGAC TGCATGGTCT GACCGTCGAC CACCTCAGTG CCGTCGACAT CGTGACCTGG
AATGAGCTGA CGGGCAGTGC TGAACTGCAC CACGTCTCGG CGTCGAGTGA CTCCACTGAC
GAACGGGACC TTTTCTGGGC TCTACAAGGG GCTGGATGTG GCAATTTCGG CGTCATCCTG
CGCTACTACT TTGATGAGCT GCCCAATGCC CCGGAGTTCG CTTCTATCTA TACGCTCTCC
TGGGATTGGA CATCGTTCGA CGCGGAATCC TTCGCGGACT TGCTCGCCGG CTATGGCGAC
TATGTGAGCG GCTTGCCCGA GACCGATTTC AGTTTGCTGA AGCTCACGCA CGTATCCGCC
GGGCAGATCG GCATGGTCGT TCAGGCGGTG TCCCCCGAAG GGGCTACTCT CCTGGACCAC
CAGGCTGAGG TCGAGCGGCG GTACGCGGAA GTGGTGGCGC GCTTTGGGGC GATCGTCGAG
CCTTCGCCGT TGCGATTTCC GCTCGGCGGC CATCCGGGGT GGACGACGGC CGTCGTCGGC
AACGAGAGCG TGCAACATGT CACCTACCTC GAGGCGCTGC AAACCATGAA CGGCTCGGGG
CCCAACCAGT TCGGCAAGTA CAAGTCCGCG TACATGAACA AGGGCTTCCC GTCGAATCAG
GTCGCTGCGA TCTACCACTG GCTCAACACG ACACCCAAGG GCGTCCCCGC CTCGGACATG
AGCCAGAGCC TGTTGCAGGT CGACAGTTAC GGAGGCGCCG TCAATCGAGT CGCTCCCGGT
GCGACCGCCG TTCCCCAGCG CGACGCGATC ATGAAGTTGC AGTATCAGAC CTACTGGCTC
AACGCCTCAC GCCCGGGTGA GGGAAGCCAG GGATCTGACA CCCAAGCCGA TGCCCACCTG
GCATGGATCA ACGACTTCTA CCGAGACGTC TACGCCGACT ACGGCGGCAC GCCCAACCCG
GCCAACGATC CAAGCGGAAC CGTCGCGGGC GCGTACTACA ACTACCCTGA CAACGTTCTC
GGCACCCACG CCGAGGGCAC CGTCGACGAC GCGTTGTGGC TCTACTTCCT CGAGAACTTC
CGCGCCGCCC CACGGAACCT CGTCGACGTG AAGCGCCGCT GGGACCCGTC GGACATCTTC
CACCACGCGC AGTCGATCCC GGTGCGGTGA
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| Protein sequence | MSTPSASSGS RPLVLSDRQG FNRRWFAPKL EAVYVPRNDD EAVAQVGEAV SRYGRDVKVV
AGRHCYENFV YNDTTRAVVD MSSMTRVGWD GGRGAFFVEA GCENWSVYRT LLNGYNKTLP
AGSCYSVGAG GHITGGGYGL LSRLHGLTVD HLSAVDIVTW NELTGSAELH HVSASSDSTD
ERDLFWALQG AGCGNFGVIL RYYFDELPNA PEFASIYTLS WDWTSFDAES FADLLAGYGD
YVSGLPETDF SLLKLTHVSA GQIGMVVQAV SPEGATLLDH QAEVERRYAE VVARFGAIVE
PSPLRFPLGG HPGWTTAVVG NESVQHVTYL EALQTMNGSG PNQFGKYKSA YMNKGFPSNQ
VAAIYHWLNT TPKGVPASDM SQSLLQVDSY GGAVNRVAPG ATAVPQRDAI MKLQYQTYWL
NASRPGEGSQ GSDTQADAHL AWINDFYRDV YADYGGTPNP ANDPSGTVAG AYYNYPDNVL
GTHAEGTVDD ALWLYFLENF RAAPRNLVDV KRRWDPSDIF HHAQSIPVR
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