| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4986 |
|---|
| Symbol | |
|---|
| ID | 8336340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5703856 |
|---|
| End bp | 5704761 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644958085 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003115687 |
|---|
| Protein GI | 256394123 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00963253 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.006941 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTTG AGACATCCGC GCCGAGGCCG CCGCTGGCCC GCCCCACCAC CGCCGCGCGC
ACCCCGGGGC TCCGTCCCCG GTCGTGGCGC AAGCCGCTGC TGTACCTGAC GATGGCAGTG
CTCGCCATCC CCTTCGTCTT CCCGACGTGG TGGATGATCA CCTCCTCCCT CCTGCCGGAG
AACGAGGTCC TCAGCTACCC GCCCAAGCTG CTGCCGCTGC ACCCGCAATG GTCGAACTAC
AAAGCCGCCT TCACGAACTA CCCGCTAGCC CACCAGTATC TCAACAGCCT CTACATCGCC
CTGCTGGTCA CCGTCGGCAC CATGGTCTTC TCCTCGCTGG CCGGCTACGC CTTCGCCCGC
ATCCCGTTCC CCGGCAACAA GTTCCTGTTC CCCCTGATCC TCACCGGGCT GCTCATCCCC
ACCGAGGTCA CCATCATCCC GCTGTTCAAA ATGGTCGACA GCCTGGGCCT GACCAACACC
CCCTGGCCGC TGATCGTCAT CCCGATCTTC GGCGCCCCCA GCGTCCTGGC CACCTTCATC
ATGCGCCAGT TCTTCCTCTC AGTCCCCGAC GACCTCGAGG ACGCCGGCCG CATCGACGGA
CTCCGCCGCT TCGGCCTGTT CTACAAGGTC GCCCTCCCCC TAGCCCGCCC AGCACTGGCG
TCAGTAGCGA TCTTCACCTT CCTCAACACC TGGAACATGT ACCTCGAACC CCTGGTCTAC
GAAACGGACA AGCGCAACTA CACCCTCCCG GTAGCCCTCA CCCAGTACAC CGACGCCTAC
GGCTCCCACC TGTGGAACAT CCAGCTCGCC GCGTCGGTGA CGACCGTCAT CCCCGTCCTG
ATCGTGTTCA TCGCCGCCCA GCGGCACTTC GTCGAAGGGC TTGCGCAGAC TGGGCTCAAG
GGCTGA
|
|---|
| Protein sequence | MSLETSAPRP PLARPTTAAR TPGLRPRSWR KPLLYLTMAV LAIPFVFPTW WMITSSLLPE
NEVLSYPPKL LPLHPQWSNY KAAFTNYPLA HQYLNSLYIA LLVTVGTMVF SSLAGYAFAR
IPFPGNKFLF PLILTGLLIP TEVTIIPLFK MVDSLGLTNT PWPLIVIPIF GAPSVLATFI
MRQFFLSVPD DLEDAGRIDG LRRFGLFYKV ALPLARPALA SVAIFTFLNT WNMYLEPLVY
ETDKRNYTLP VALTQYTDAY GSHLWNIQLA ASVTTVIPVL IVFIAAQRHF VEGLAQTGLK
G
|
|---|
| |