| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4390 |
|---|
| Symbol | |
|---|
| ID | 8335744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4982500 |
|---|
| End bp | 4984458 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644957493 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_003115095 |
|---|
| Protein GI | 256393531 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.86257 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.698434 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTCG GCTCCTTCTC CTCGGTCCCC AAGGTCGAGA TCGGCGGCAC GCTGCCCCGG
CTCCTGAAGG CCTCCCTGGA CTCCTGCTGG GTGGAGTCCA CCCTGAACGT GCCCTCCACC
TTCCACATCG CGTTCAAGGA CAAGACCCGC CTGCTGATGT CCACCAACGC GCAGCTGAAG
ATCGGCGCGC CGGTGACGAT CTTCGCCGTC GCCGGGCTCA TCGGCGAGGA CCAGCCGCTG
ATCACCGGGC AGGTCACCGG GATCGAGGCG GACTACTCCG GCGGCGACTT CTACACCGTC
ATCCGCGGCA TGGACCACGC CTTCAAGCTG CTGCGCAAGC GGCGGGTGGC GCTGTACAAG
AACATGTCCG CCTCCGACAT CGTGCGCCAG GTCGCCGGGC AGCACGGGGT GGCGATCGGC
AAGATCGAGT CCACGCCCCC GCCGCCTCCG GACTCCCAGA CCTCCCAGCC CAACGTCGAC
GACTGGACCT TCCTGCAGAG TCTGGCCGAG CGCGCCGGCA AGGTCGTGTA CTTCGACAAC
AAGGGCCTGC TGCACTTCCG CGCGCCGGTC AAGGCCGTGC CGCTGACCGG GCTCAGCGCC
GACAAGAGCC CGTACGTGCT CGAATTCGGT GCCAACACCC TGCGCTGCCG CTCCGGCTTC
ACCGCCGCCG ACCAGGTCTC CATGGTCAGC TCGCGGGGCT GGAACATGGT CACCAAGCAG
ACCCTGATCG GCCGGGCGCA GGCCGCGGCG AACCCCGACG TGCTGGCCGG ACTGAGCCCG
GCGCAGGTCT CCCGGCCCTT CGGCACCGGC ACGCTGGTGG AGACCGGCAC CCCGTATGTC
AGCCAGAGCG AGACCGACTC GGCGGCCAAG TCCCTGGCCA CCGACGTGAC CTCGTCCTTC
GCCGAGCTCG AGGTCGCCGT CCGGGGCACC CCGCAGCTGC TGCCCGACAA GTCGGTCACC
CTGACCAAGG CCGGCACGCC CTTCGACGGC GCCTACACCG TCACCGGCGT CCGCCACCTG
TTCGAGCACG GCACGTACGA GACCTGGGTG TCCATGACCG GCCGGCAGTT CCGCTCGCTC
TACGGCCTGG CCTCCGGCGG CGCGCACGGT CCCGGCGGCA CCGGGCAGCG GATGAGCGGC
GTGGTCAGCG GGATCGTCAC CGACATCCAC GACCCGCTGC GCATGGGCCG GGTCAAGCTG
CGCTTCCCCT GGCTCGACGA CGACTACGTC AGCGACTGGG CCCGCACCGT CCAGCACGGC
GGCGTCAGCG TGCACGGCGG TCTGGAGCCG GCCCACGGCG CCGACCACAT CCCCGCCGGC
TCCCCGGGCT CCGGCGGCTT CATCGGCTAC GCCGTCAACG ACGAGGTGCT GGTCACCTTC
GACCGCGGCG ACTTCGACCA GCCCTACGTC ATCGGCGGGC TCTACAACGG CGTGAACAAG
CCGACCCGCT TCACCGAGGA CAACCTGGTC TCCAAGGACG GCATCCCCAA CGTGCTCGCC
GTGTCCTCCC GGCGCGGCAA CCGGCTGGAG CTTCTGGACG ACGAGCTCGG CATGAAGGCC
GGGGTCAAGG TCCTGACGAG CGACGAGAAA CAGAGCATCG AGCTGGACAA GATGACCAAG
ACCAGCACCG TCAAGAACTC CGTCGGCCCG ATCATGGTCG AGAGCAACGC CCCTGACGGC
CGGGTGACGA TCCGCAGCGG CGCGGCCAGC ATCACCCTGA CCGCCGAGGG CACCGTGAAC
ATCGAGGGCG CCACCGAGGT CAGCGTCTCG GCCGGCGCGA TGCTCTCGCT CAAGGCCGCC
GAGCTGAACC TGGCCGCGCC GGTCACCACG GTGGAGTCCG CGGAGATCAA CTTCGCCGGC
GCGTCGTTCT CCGTCGAGGC GGCCGAGATC ACGCTGACCG GCAACGTGGC CATCGTCGGC
GAGGGCACGA TCGACGCCCA GCAGATCGTG GTGATCTGA
|
|---|
| Protein sequence | MTFGSFSSVP KVEIGGTLPR LLKASLDSCW VESTLNVPST FHIAFKDKTR LLMSTNAQLK
IGAPVTIFAV AGLIGEDQPL ITGQVTGIEA DYSGGDFYTV IRGMDHAFKL LRKRRVALYK
NMSASDIVRQ VAGQHGVAIG KIESTPPPPP DSQTSQPNVD DWTFLQSLAE RAGKVVYFDN
KGLLHFRAPV KAVPLTGLSA DKSPYVLEFG ANTLRCRSGF TAADQVSMVS SRGWNMVTKQ
TLIGRAQAAA NPDVLAGLSP AQVSRPFGTG TLVETGTPYV SQSETDSAAK SLATDVTSSF
AELEVAVRGT PQLLPDKSVT LTKAGTPFDG AYTVTGVRHL FEHGTYETWV SMTGRQFRSL
YGLASGGAHG PGGTGQRMSG VVSGIVTDIH DPLRMGRVKL RFPWLDDDYV SDWARTVQHG
GVSVHGGLEP AHGADHIPAG SPGSGGFIGY AVNDEVLVTF DRGDFDQPYV IGGLYNGVNK
PTRFTEDNLV SKDGIPNVLA VSSRRGNRLE LLDDELGMKA GVKVLTSDEK QSIELDKMTK
TSTVKNSVGP IMVESNAPDG RVTIRSGAAS ITLTAEGTVN IEGATEVSVS AGAMLSLKAA
ELNLAAPVTT VESAEINFAG ASFSVEAAEI TLTGNVAIVG EGTIDAQQIV VI
|
|---|
| |