Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4266 |
Symbol | |
ID | 8335620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4842331 |
End bp | 4843008 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644957369 |
Product | beta-Ig-H3/fasciclin |
Protein accession | YP_003114971 |
Protein GI | 256393407 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2335] Secreted and surface protein containing fasciclin-like repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.577289 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.629053 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCTCCA CCCGGAGCAA GACCGCCGCC GCCCTGCTGT GCTCGGCGGC GATCGCGGTG AGCGCGAGCG CGTGCAGCAG CAGCGCCAGC AAGACCGCAG CCGCTTCGAG CACCTCCTCC TCCAGCATGG CGTCCAGCAC GACCCCGGCC GCCGGCTCCA CCAGCGCCAC GACCTCCTCG GACACGAGCA CGGCCGCCGG CAGCACGGCA GCGTTCGGCA GCGCCTGCTC GGCGGTCCCC ACCACCGGCC CGGGCAGCTT CACCGGCATG GCCACCGATC CGGTCGCCAC CGCCGCCTCC CACAACCCGG TCCTGTCCAC GCTGGTGACG GCGGTCGGCG CGGCCGGCCT CGGCGACACC CTCAACAGCG CCCAGAACAT CACGGTCTTC GCCCCCGCCA ACGACGCCTT CACCAAGATC CCCGCCGCCA CCCTGAAGTC GGTCCTGGCC GACAAGGCGC AGCTCACCAA GATCCTGACC TACCACGTCG TCTCCGGAAA GCTCACCCCC ACCCAGCTCG CCGGCACGCA CACCACCCTC GAAGGCGGCA CCCTCACCGT CACCGGCTCC GGCCAGTCCT TCCAAGTCAA CGGCGCCAAC GTGATCTGCG GCAACGTCCA AACCGCCAAC GCCACCGTCT ACATCATCGA CACGGTCCTG ACGCCCCCCA CCAGCTGA
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Protein sequence | MFSTRSKTAA ALLCSAAIAV SASACSSSAS KTAAASSTSS SSMASSTTPA AGSTSATTSS DTSTAAGSTA AFGSACSAVP TTGPGSFTGM ATDPVATAAS HNPVLSTLVT AVGAAGLGDT LNSAQNITVF APANDAFTKI PAATLKSVLA DKAQLTKILT YHVVSGKLTP TQLAGTHTTL EGGTLTVTGS GQSFQVNGAN VICGNVQTAN ATVYIIDTVL TPPTS
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