| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4136 |
|---|
| Symbol | |
|---|
| ID | 8335490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 4675756 |
|---|
| End bp | 4677390 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644957239 |
|---|
| Product | Curculin domain protein (mannose-binding) lectin |
|---|
| Protein accession | YP_003114841 |
|---|
| Protein GI | 256393277 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.489882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCT CCCGACGCAC CCTGCTGTCC TCAGCCCTGG GCGGCGCAGC GCTGGCCACC
GTGGCCGGGA CCGAACTGAC CTCGGCGTTC GCCGGTCCGG CGCCGGCGGC GGCGCCGGCC
GCCTCGCCCG CCGGCGACGT GGTCGGCAAG ATCACCGTCG GCTACCAGGG CTGGTTCGCC
TGCATCGGCG ACGGAGCGCC GATCAACGCC TGGTGGCACT GGAGCCAGAA CCAGGGGCAG
GCGCCCTCGC CGAGTAACCA GAACCTCAAG GCGTGGCCCG ACATGAGCGT CTACAGCGCG
GGCTACCGGA CCGGATTCGC CAATCTGGGC AACGGTTCCG CGCCGAACTT GTTCTCCTCC
TACGACCAGT CCACGGTCAA TGCCCACTTC TCGCTGATGC AGCAGAACGG CTGCGACACC
GCGGCGCTCC AGCGCTTCAA CCCCAACGGC AGCGAGGGCC CGACCCGCAA CGCGGTCACC
GCGAAGGTCA ACACCGCCGC GCAGCAGTAC GGCCGGAAGT TCTACATCAT GTACGACGCC
TCCGGCTGGA CGAACATGAA GACCGAGATG CCCGCCGACT GGACGAACGT GATGAAGCAG
TACGCCTCGT CCCCGGCGTA CGCGCACCAG AACGGCAAGC CGGTCGTCGG CATCTGGGGC
TTCGGCTTCA ACGACGCCAA CCACCCCTGG TCCGCCGCCG ACTGCCTGTC GGTCGTGCAG
TGGTTCCAGA GCCAGGGCTG CTACGTGATG GGCGGCGTGC CGACGTACTG GCGCACCGGC
GTGAACGACT CGCGCTCCGG ATACAGCGGC GTCTACTCCG CGTTCAACAT GATCTCGCCG
TGGATGGTCG GGCGCATCGG CTCGGTCAAC GATTCGAACA ACTTCTATAC GAACGTCAAC
GTCGGCGACC AGTCCTACTG CAACTCCCAC AACATCGACT ACCAGCCGTG CGTCCTGCCC
GGCGACCTGT CGGCCCGCCA GCGCGCGCAC GGCGACTTCA TGTGGGCGCA GTTCTACAAC
ATGGTGCGCG TCGGCGCGCA GGGCATCTAC ATCTCCATGT TCGACGAGTA CGGCGAGGGC
AACCAGATCC TCAACACCGC GCCGACCCAG GCGTTCGTGC CGACCAACTC CGGGCTGCTC
TCCCTGGACG AAGACGGCAC GGCGTGCAGC GCGGACTACT ACATGCGCCT GACCAACGAC
GGCGGCAGGA TGCTCAAGGG ACAGATCGCG CTCACCCCGA CACGTCCCAC CGCGCCCGGC
GGCACCAACG GCGGTGGCGG CGGGACCGGC GGCGGGTGTG GCCAGCTGAC CGCCAACCAG
CAGCTCACCG CGAACCAGTC CACGCTCTCC TGCGACGGCC GGTTCAAGCT GATCCTGCAA
GGCGACGGCA ACCTGGTGCT CTACCAGGGC AGCGCGGCGC TGTGGGCGTC GAACACCGTG
GGGAAGGCCG CCGCCAAGGC CGTCCTGCAG GGCGACGGCA ACTTCGTGAT CTACGACACC
GGCGGCGCGC CGCTGTGGGC CAGCAACACG GCCGGGAACA ACGGCGCGCA CCTCACGGTG
CAGAACGACG GCAACACCGT CATCGTCAGT TCCGCCGGCG CGACCCTGTG GAGCACCGGG
ACCGGCGGAC ACTGA
|
|---|
| Protein sequence | MTLSRRTLLS SALGGAALAT VAGTELTSAF AGPAPAAAPA ASPAGDVVGK ITVGYQGWFA
CIGDGAPINA WWHWSQNQGQ APSPSNQNLK AWPDMSVYSA GYRTGFANLG NGSAPNLFSS
YDQSTVNAHF SLMQQNGCDT AALQRFNPNG SEGPTRNAVT AKVNTAAQQY GRKFYIMYDA
SGWTNMKTEM PADWTNVMKQ YASSPAYAHQ NGKPVVGIWG FGFNDANHPW SAADCLSVVQ
WFQSQGCYVM GGVPTYWRTG VNDSRSGYSG VYSAFNMISP WMVGRIGSVN DSNNFYTNVN
VGDQSYCNSH NIDYQPCVLP GDLSARQRAH GDFMWAQFYN MVRVGAQGIY ISMFDEYGEG
NQILNTAPTQ AFVPTNSGLL SLDEDGTACS ADYYMRLTND GGRMLKGQIA LTPTRPTAPG
GTNGGGGGTG GGCGQLTANQ QLTANQSTLS CDGRFKLILQ GDGNLVLYQG SAALWASNTV
GKAAAKAVLQ GDGNFVIYDT GGAPLWASNT AGNNGAHLTV QNDGNTVIVS SAGATLWSTG
TGGH
|
|---|
| |