| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3997 |
|---|
| Symbol | |
|---|
| ID | 8335350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 4528403 |
|---|
| End bp | 4529245 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644957110 |
|---|
| Product | transcriptional regulator TrmB |
|---|
| Protein accession | YP_003114713 |
|---|
| Protein GI | 256393149 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.182291 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0312919 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTCT TAATCTGCGG GCTTCGGGGT TCAACTCCCT GTGGCGCACC CCGTAGCTCA
TCTCCAGTTC AAGCTTCTGA GCTGGGGTTT TGCGCTATGG TGCCCGAAGA GCTTAAACCT
CTTGATGGGG CGTCAGCTTT GTGGTCTCGG CGAGGCCCGG CACCTCGCAC CGCGCACCTC
GCACCGCGCA CCGCGCACCG CGCACCGCGC ACCGCGCACC GCGCACCGCG CACCGCGCAC
CGCGCACCGC GCACCGCGCA CCGCGCACCG CGCACCGGCC ATGATCGACG CGAGCGTGCG
ACGCACCGTG GTAATCCACA TGAAGTCTCC AGACGACAAC TGACCTCGGC TTTCCGACTA
CCGCCTACAT ACTTGCCTCC CGGATCGAAA TCGGCACTGG CGGTAGGCAA CTACTGCAAC
CTTATACATG AACCAACATG CAGCATTTAC GATGGAGGCG TGACTTCCCT TGACGCTCGG
ACCTGGGCAC TTCTGACCGG GCACGGCCAT GTGTTGGTCG CGGTGACGCG GAATCCGCAG
GCACGGGTTC GTGAGCTGAG CGAGGAGGCA GGCCTCAGCC AGCGTGCGAC TCAATCGATC
CTGGCGGATT TGGAGGTTGC CGGGTACATC ATCAGAACGC GGACAGGGCG GCGGACTGTC
TACACGGTTG ACCTGGATCA CCCGTTTCGG CATCGAGCTC AGGACGGACT GCGGGTCGGG
CCGCTCTTGC TGTGGTTGGC TTCAACCTCG GGGGAGTTTC CGTCGGCGGT TTCCGCCGAA
CTTGGCGAGC CGGGTTTGGT TGCCGCCCCT GGCCTCACGC TGGCCGGAGA GCCTGCCTTC
TGA
|
|---|
| Protein sequence | MAVLICGLRG STPCGAPRSS SPVQASELGF CAMVPEELKP LDGASALWSR RGPAPRTAHL
APRTAHRAPR TAHRAPRTAH RAPRTAHRAP RTGHDRRERA THRGNPHEVS RRQLTSAFRL
PPTYLPPGSK SALAVGNYCN LIHEPTCSIY DGGVTSLDAR TWALLTGHGH VLVAVTRNPQ
ARVRELSEEA GLSQRATQSI LADLEVAGYI IRTRTGRRTV YTVDLDHPFR HRAQDGLRVG
PLLLWLASTS GEFPSAVSAE LGEPGLVAAP GLTLAGEPAF
|
|---|
| |