| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3890 |
|---|
| Symbol | |
|---|
| ID | 8335243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4407766 |
|---|
| End bp | 4409886 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644957016 |
|---|
| Product | KAP P-loop domain protein |
|---|
| Protein accession | YP_003114619 |
|---|
| Protein GI | 256393055 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4928] Predicted P-loop ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.329172 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0371093 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCCA ATGAGCTCTA TCGCGACAGC ACGGTCGACG GTTCGCCAAC GGCCCCCGAC
CTGCTCGACC GTGCCAGGTA CGCCGAGCAC CTGGTGAAGC TCCTGGACCG CGTTGCCGAC
GGCGACGACT CGAGCGTGCT CGCGTTGATC GGGCCGTGGG GTTCGGGTAA GTCCAGCGTC
CTGGAAATGG CTACTGCCCA TCTTCGCTCG GGCGGTGGCG AAGAGACATG GCTCATCGGT
GAGTGCAACC CGTGGGCCTA TGCCGACCAG GAGTCGCTGA TCCTCGGGTT CTTCGCGGAA
CTCCGCGCGG CGCTGCCCAA GGGCGACCGC TGGAGCGAGA CGCGGATGCG CATCGGCGAG
ATCGGTGCTT CCGCCAGCCG CCTGGGCAAA GTGGGTGCCT TCGTCAGGAT GGACGCGAGC
GGACCGGTCG ACGCAGTGAC CGCGTTGATC GCAGGCGACA ACGGAGCGGC CGCGATCAGG
AAGCGGGCGA TCGAAAGTCT GGGGGGCGTG GGGCGGCCAA TCTTGATGGT TCTTGATGAC
CTGGACCGGC TCACGCCCAG CGAGCTGCTG ATGGTATTCA AGTTGGTCCG ACAAGTCGGG
CGTCTGCCGA ACGTCTACTA CCTCTTGTGC TACGACGAGC AGACTCTCCT GGACGTCCTG
AAGCGCACGG AGCTGGTCGG AGGAGACATC CGGCGAGCTC AGGACTACCT GGAGAAGATG
GTCCAGATCC GCCTTGACCT CCCCGCACTG CGCAACCCTC AGATCACCTC CTTGACCGAC
GCGGCGATCG ACGCGGTCGT GCGAGAGAAC GGCGTCAGAC TGGACCGGCC GCAAACCGAC
CGGATCGGCA CCGCTTACCA CTCGCATATG AAGGACCGTT TGTCGACCCC GCGTGCCATC
CGACGCTTCT TCGCTCAGGT GAACGCCGCG TACGGGGCAG TCGGCGAAGA CGTCGACTTC
GTTGACTTCA TGCTGATGAC GTTCGTGCGC ACCGTTGAAC CCGCGGCGTA CGCCATGCTC
CACCGGCACA AGGACCTCCT TGTCGAAGGC GGGTTCACCG TGCCTGGCTA CCTCGAGAAT
CAAAAGACAC CGCAGGAACG CGCCAAGGCA TGGACGGACC GGCTTCGAGG CGCGGGCGTC
GCGGAGGCGG ACATCGCAGG GCTGCTCAAA CTGCTGTCAC TGATGTTCCC TCCACTGGAT
GCTGCGGTCA GCGGATCGTC CGTCAAGCGC GGTGACCTGG AAGACATCTG GCGCCGCCTC
GGTGTCGGCC ACGCCGACTT CTTCGACCGG TATTTCAGCT TCGGCGTCCC CCAGGAGGAC
ATCGCCAACA GCACTGTCGC CGAGGGACTG CGCCAACTGA GCGTGGGGCA GCCGGGCGAC
GAGCTGGCTC AGTTGACCGC CAGCCTGCGT AGCGACACCG ACCGGGTCGT TCGCAAGGTC
GACGCGATGC TCGGATCACC CGAAGTGAAT CCCGGAGCGC TACTTTCGCT CCTTGTCGAC
GTGTACGAGC ACGTGCCTGA GCCGATCGGG TTCCTTAACG ATGGCGGGCG GTTCGGTCTC
GCGTCCCTCG GTGGAAAGCT GCTCGCCGCC CTGGGAGCAG CAGCCGACCG CGACCTGCTC
AGTGGGCTGG GAACCAGCAG CACGCGTATG GAGTTCCTCG CGGTCGCAGC CGAACGCCTT
CCCACGTCCG AACCCGCACG GGTGATAGTC GGGCAGATCA TCCACACGCG GCTCGAGGCC
GCCGACGCCT TGGACGGAAT GCCGGACGAG CTTTTCAACC TCATCTGGCC TTGGGGTCGA
ACCGATCTGG AAGGGTTGCG TACCTGGATG CGCGACCGCA TCGAATCCGG CACCTGGCCT
CTTGCCGCTG TGATCGCAAG GTTTGTCACA GTCAGCTGGG CTACCGGCAA CGGCCCACCG
CGCAGATCGA TTGCGCAGTT CAGCCTGAAG GATGTTGATG CCATCCTCGG GCTCCCCTCC
GTCTTGGCCG AGCTCGCCGA CGAGATCGAG TCTGCCACCG GCGACGTCGA TGTGTTCGAC
GCGGACCCGA CCGCGGAGAA CCGGCTGCAG TATGCATTGG GGGTGCTGAA GACAGCGCGT
GACCGTGGGG CGGGCGAGTG A
|
|---|
| Protein sequence | MDANELYRDS TVDGSPTAPD LLDRARYAEH LVKLLDRVAD GDDSSVLALI GPWGSGKSSV
LEMATAHLRS GGGEETWLIG ECNPWAYADQ ESLILGFFAE LRAALPKGDR WSETRMRIGE
IGASASRLGK VGAFVRMDAS GPVDAVTALI AGDNGAAAIR KRAIESLGGV GRPILMVLDD
LDRLTPSELL MVFKLVRQVG RLPNVYYLLC YDEQTLLDVL KRTELVGGDI RRAQDYLEKM
VQIRLDLPAL RNPQITSLTD AAIDAVVREN GVRLDRPQTD RIGTAYHSHM KDRLSTPRAI
RRFFAQVNAA YGAVGEDVDF VDFMLMTFVR TVEPAAYAML HRHKDLLVEG GFTVPGYLEN
QKTPQERAKA WTDRLRGAGV AEADIAGLLK LLSLMFPPLD AAVSGSSVKR GDLEDIWRRL
GVGHADFFDR YFSFGVPQED IANSTVAEGL RQLSVGQPGD ELAQLTASLR SDTDRVVRKV
DAMLGSPEVN PGALLSLLVD VYEHVPEPIG FLNDGGRFGL ASLGGKLLAA LGAAADRDLL
SGLGTSSTRM EFLAVAAERL PTSEPARVIV GQIIHTRLEA ADALDGMPDE LFNLIWPWGR
TDLEGLRTWM RDRIESGTWP LAAVIARFVT VSWATGNGPP RRSIAQFSLK DVDAILGLPS
VLAELADEIE SATGDVDVFD ADPTAENRLQ YALGVLKTAR DRGAGE
|
|---|
| |