| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3179 |
|---|
| Symbol | |
|---|
| ID | 8334532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3508834 |
|---|
| End bp | 3509829 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644956325 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003113928 |
|---|
| Protein GI | 256392364 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000170271 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCGCATCC TCCGACACCC CGGCCGGGTC CGGGGCGCCA CGGCCGCGCT GCTCGGCCTC
GGTCTGGTCC TGGCCGCTAC TTCGACGGCG ACCGCGACGA CGGCCACCCC CGCCCACGCC
GCCGCCTCCC GCCACGCCGA CGGCGGCACG CACCGCTCCC CGCACACCGC CGGTCTGAAC
CACGCCAAGG CTCCCGCCTC GACGATCATG TGCGCGAAGG TCGCCGCCAA GGCGGGCTTC
TCCTTCAACC GCACGGTCGC CACCTCGCTG GGCCAGGAGC CGCAGATCGT CGTCGCGATC
GCGGTGGCCA TGGCGGAGTC CAGCTGCAGC CCGAGCGCGG TGAACGTCAA CTCCGGCGGT
TCGCGCGACC GAGGCCTGTG GCAGATGAAC AGCTACTACC ACTCCGAAGT CTCCGATTCC
TGCGCCTTCC AGATCCAGTG CAACGCCAAC TCGGCCTGGA ACATCTCCAA CCACGGCACC
GACTGGAAGC CCTGGACCAC CTTCGCGTCC GGCGCATGGA AGACCTACCT CGCCGCCGCG
CGATCGGCGG TCTCCGGCGG CTTCACGTTC CAGCTCATCG ACTCCGCCGC CGGCACGTGC
CTGGACGCCG ACAGTGCAAA CCACGCCAAC GGCGCGCCGG TCCGGCAGTG GGCTTGCGAC
GCGAGCGACC ACTACCAGCA GTGGACGGTC GTCTCCAGCG TCGGAGCGCT GCCGATCCTG
CGCAACCTCG GCACGGGGAC CTGCCTGGAC TGGGATGGAA CCAAGGTCGG CAACGCCCAG
CCGATCGTCC AGTGGGCCTG CGACGCCGCC GACGCCAGCC AGCAGTTCTC GTTCCTCGGT
AGCGGCCGGA TGAACGTCGA CGGCCAGGCG CAGGCGCTGA TGCAGAACAG CCACGCCGGG
ACGTGCCTGG CGGTGCAGGG GACGAACCAC GCCAGCGGTG CGCCGGTCTG GCAGGGGACG
TGCAGCGCGA GCGACGGGTA CCAGATGTGG GATTGA
|
|---|
| Protein sequence | MRILRHPGRV RGATAALLGL GLVLAATSTA TATTATPAHA AASRHADGGT HRSPHTAGLN
HAKAPASTIM CAKVAAKAGF SFNRTVATSL GQEPQIVVAI AVAMAESSCS PSAVNVNSGG
SRDRGLWQMN SYYHSEVSDS CAFQIQCNAN SAWNISNHGT DWKPWTTFAS GAWKTYLAAA
RSAVSGGFTF QLIDSAAGTC LDADSANHAN GAPVRQWACD ASDHYQQWTV VSSVGALPIL
RNLGTGTCLD WDGTKVGNAQ PIVQWACDAA DASQQFSFLG SGRMNVDGQA QALMQNSHAG
TCLAVQGTNH ASGAPVWQGT CSASDGYQMW D
|
|---|
| |