| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2458 |
|---|
| Symbol | |
|---|
| ID | 8333807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2778439 |
|---|
| End bp | 2779437 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644955611 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_003113217 |
|---|
| Protein GI | 256391653 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCC CCGCTCGCCG TTCCCAGCCC AGCAAGTCCG GTGGAGGCCG GGGCTCCGGC
TCCGGTGGCG GAGCGCGGGG TTCCGGCGGC TCTCGGCAGG CTGGTGCGGG TTCCGGTGGG
TCTCGGCAGC CTGCGCCCGC TGGTGGACGT TCGCCTGGCA AGGCTGGTGG TCGCTCCGGT
GGGTCGGGCG GTGGTGGCAA TGCTTCCGGC GCGAATGCCG CCGCCGGCTC CGGTGGTCGT
GACTGGCGCG ACTATGACCC CTTTGCGGAC GCCAACGAAG AGGGCATCCG CCTTCAGAAG
GTTCTGGCGC AGGCCGGGGT CGGCAGTCGG CGGGTCAGCG AGGATCTGAT CGCCGCCGGC
CGGGTTGAGG TCAACGGTGA GATCGTGCGG CATCAGGGCA TGCGCGTGGA TCCCGAGACC
GCGGTGATCC GGGTCGACGG GATGCGCATC TCGACCGCTG AGGGGATCGT GCACTTCGCG
TTCAACAAGC CGATGGGCGT GGTGTCCGCC ATGGACGACC CGGATCGGCC CAACCTCGGC
GACTACGTGC GCGGGCGCAA CGAGCGCCTG TTCCACATCG GACGCCTCGA CGTCGACACC
GAGGGCCTGA TCCTGCTGAC CAACGACGGG GAACTCGCGC ACCGGCTGGC GCATCCGTCC
TACGAGATCC GCAAGGTCTA CCGCGCGCAG GTCTACGGCA CCGTGCCGAA GGACCTGGGC
CGCCGCCTGC GCGAGGGCGT GGACCTGGAG GACGGTCTGG CACGCGTCGA CCACTTCCGC
CTGCTGGACT CCGTCGGCCG CAACGCGCTG GTGGAGATCA CCATCCACGA AGGCCGCAAC
CGCATCGTCC GGCGCATCAT GGACGCGGTC GGGCTCCCCG TGCGCGGCCT GGTGCGCACC
AAGTTCGGCC CGATCTCGCT CGGCGACCAG AAGCCCGAGC GCATGCGTCC GCTCAACAAG
GAAGAGGTCG GCGCGGTCTA CAAGTCCGTC GGACTCTAG
|
|---|
| Protein sequence | MNTPARRSQP SKSGGGRGSG SGGGARGSGG SRQAGAGSGG SRQPAPAGGR SPGKAGGRSG
GSGGGGNASG ANAAAGSGGR DWRDYDPFAD ANEEGIRLQK VLAQAGVGSR RVSEDLIAAG
RVEVNGEIVR HQGMRVDPET AVIRVDGMRI STAEGIVHFA FNKPMGVVSA MDDPDRPNLG
DYVRGRNERL FHIGRLDVDT EGLILLTNDG ELAHRLAHPS YEIRKVYRAQ VYGTVPKDLG
RRLREGVDLE DGLARVDHFR LLDSVGRNAL VEITIHEGRN RIVRRIMDAV GLPVRGLVRT
KFGPISLGDQ KPERMRPLNK EEVGAVYKSV GL
|
|---|
| |