| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2356 |
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| Symbol | |
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| ID | 8333705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 2670381 |
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| End bp | 2672405 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644955509 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_003113115 |
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| Protein GI | 256391551 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGACG CGCCGGCGCC GGACACGACA CGACACACGA AGAGACGGAC GAATCCCTTG
GCCGGATCGA AGGCTCCGCG GTCCCGGAAC CGCAAAACGA GCCCATGGAC CCCCCTGACG
GCGCTGGCCG CCGTCATCAT GGCGCTGGTC GGCACCATGA TCGGTACGGG GCACCGCACC
CCCCAGCTCG GTATCGACCT GGCCGGCGGC ACCACCATGG TGATGACCGC ACAGGGCAAC
AAGGCCCCGT CGACCGGCGA CATGGACACC GTGCTGCAGA TCATGCGCAA CCGCGTCAAC
GGGCAGGGTG TGTCCGAGGC CGAGGTGACC AAGCAGGGCA ACAACGCGAT CGAGGTCGAC
CTGCCGGGCA AGAACTCCTC GGAGTTGCTG GCCCAGCTCG GCCAGACCGC GAAGCTCTAC
TTCCGTGTGG TGGTCGACCC CACCACGCTG CAGCTGCCGG CGCGCACCAC CCCGGCGCCG
CAGCCGCAGA CGCCCGCGCC GTCCACGCCG AGCCCGACCG GCACGGCGAC CTCGCCGTCC
GGGTCGGCGA GCTCCACGCC GTCGTCCACC TCCTCGTCGA AGGCCAGCAG CTCCCCGTCC
TCGAAGGCGA GCACTCCGGC CACGCCCTCG GGCACCGCGA CGTCCACCCA GCACCGGGTC
GCCGACTCCG GCCTGAAGGA CGCCACCGGC AGCGGCGGCA GCACCGCCAC GACGACGCCG
AGCAGCACCG CGACGGCGAC CGCGAGCTCC AAGAGCACCG CGTCCGCGCC CTCGACCCCG
TCGTCGAACC CGTCCTCGGG TGCCTCCGCG CCGTCCTCCG GCGCCACGCC GGCGCCCAGC
GCCTCCGCGA GCGCCCCGGC CAAGGCGCCC GACGGCACGG TCAAGGAGAC CCAGCCCAGC
GACCAGTCGG TCGAGCTGTA CGAGACCATC GACTGCAACC ACCCGCCGAC GAACCTGGGC
AGCATGTTCG CCGCCAACCA GTTCGCGGTC GGCTGTGACT ACACCACCAA GGTGCCCTAC
CTGCTCGCCC CGGCCGACGT GGACGGCAAG GACCTGTCCA GCGCCTCGGC CAACCCGGTG
ACCGCCGGCG GCCAGAACCA GTTCCTGACC GGCGAATGGC AGGTGGACCT GTCCTTCAAC
AGCAAGGGCG CCAAGGACTT CGCCAACGTC TCCTCCCAGC TGGTCGGCAC CGGCGGGCAG
TTCGCCGTGG ACCTGGACGG CCTGGTCTAC AGCGCGCCGA CCGTGCAGCA GCCGATCACC
GACGGCAACG CCCAGATCAC CGGCAACTTC ACCCAGAAGA CCGCCCAGAA CCTGGCCGAC
GTGCTGAAGT ACGGCGCGCT GCCGATCACC TTCAACGAGG GCAACGTCTC GCAGATCTCG
GCCTCCCTGG CCGGCAACCA GCTCTCGGCC GGCCTGATCG CCGGCGGGAT CGGCATGGTG
CTGGTCATCA TCTACCTGAT CGCCTACTAC CGCGGCCTGT CGATCGTGGC CATCGCCTCG
CTGGCGATCT CCGGGATCCT GACCTACTCG CTGGCGAGCC TGCTCGGCCC GGCGATGGGC
TTCCGGCTCT CGCTGGCCGG CGTCGCGGGT CTGGTGGTCG CCATCGGCAT CACCGCGGAC
TCGTTCGTGA TCTTCTTCGA ACGACTCCGC GACGAGGTCC GTGAGGGCCG TACCCTGCGC
ACAGCCGTGG ACCACGGCTG GGTCCGGGCC CGGCGCACGA TCATCTCCTC GGACTTCGTG
TCCTTCCTCG CCGCCTTCGT CCTGTACGAG GTCTCGATCG GCACGGTGAA GGGCTTCGCG
TTCACCCTCG GTCTGACCAC GCTGCTGGAC ATCGTCGTGG TGTTCATGTT CACCAAGCCG
ATCGTCACGC TGCTGGCCCG CCGGCGGTTC TTCAACGACG GCCACCCGTG GTCCGGCCTG
GACCCGAACC GCCTGGGCGT CAAGAAGTCC CCGGGCATCC GCCAGACGAT CGTCGACCGC
CGTGCCGCAG CCCGCCAGGG CTCCGCGGAA GGGATGGAAG CCTGA
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| Protein sequence | MTDAPAPDTT RHTKRRTNPL AGSKAPRSRN RKTSPWTPLT ALAAVIMALV GTMIGTGHRT
PQLGIDLAGG TTMVMTAQGN KAPSTGDMDT VLQIMRNRVN GQGVSEAEVT KQGNNAIEVD
LPGKNSSELL AQLGQTAKLY FRVVVDPTTL QLPARTTPAP QPQTPAPSTP SPTGTATSPS
GSASSTPSST SSSKASSSPS SKASTPATPS GTATSTQHRV ADSGLKDATG SGGSTATTTP
SSTATATASS KSTASAPSTP SSNPSSGASA PSSGATPAPS ASASAPAKAP DGTVKETQPS
DQSVELYETI DCNHPPTNLG SMFAANQFAV GCDYTTKVPY LLAPADVDGK DLSSASANPV
TAGGQNQFLT GEWQVDLSFN SKGAKDFANV SSQLVGTGGQ FAVDLDGLVY SAPTVQQPIT
DGNAQITGNF TQKTAQNLAD VLKYGALPIT FNEGNVSQIS ASLAGNQLSA GLIAGGIGMV
LVIIYLIAYY RGLSIVAIAS LAISGILTYS LASLLGPAMG FRLSLAGVAG LVVAIGITAD
SFVIFFERLR DEVREGRTLR TAVDHGWVRA RRTIISSDFV SFLAAFVLYE VSIGTVKGFA
FTLGLTTLLD IVVVFMFTKP IVTLLARRRF FNDGHPWSGL DPNRLGVKKS PGIRQTIVDR
RAAARQGSAE GMEA
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