| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1717 |
|---|
| Symbol | |
|---|
| ID | 8333060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 1947765 |
|---|
| End bp | 1948592 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644954867 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003112479 |
|---|
| Protein GI | 256390915 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.393807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCGTGA CGGAGCCGCC GGCGCCGGTA TGGCCGGTCA AGGTCGCGAC TGCCCCGGTC
AACTTCGGGA TCTACTCGAC CGCGAATCCC TTCATCAGCG CCTCGGAATA CGCGCGGATC
GCCGTGGACT GCGGATATGA GGGTACTGAT CTCGGGCCGC ACGGCTACCT GGACGAGGTG
CTGGCCGCCG ACGACTCCGA TCTGCCGCTG GCGGGCGGTT GGCACGACCT GAGGTTCGGG
CAGAACGACG GGTTCGCCGC GGACCTGGCA GCCCTCGAAG ACACCGCCCG ACTGCTGCAC
GCGCGCAACC ACTACCCGGA CATGAGCAGC TTCGCGCCGA AGCCGACGCT GGCCTGCCCG
CCGTCCGGGC CGTTGGACGC CGCCGGGTGG GGACTGCTGG TCCGGCAGGC GTACCGGGCC
GCCTCGCGCT GCCGCGAGCA CGGTCTGGAG CCGGTGTTCC ACCACCATCT GGACACCAGC
ATCGAGACCC CGGACGACAT CGACCGGCTG CTGGAGCTGA CGGAGCTGGA GCTGTGCCTG
GACACCGGGC ATCTGCTGGC GGCCGGGGGC GATCCGCTGG CGATGCTGGA GCGGTGGGGG
GACCGGGTGC GGCACGTGCA CGTGAAGGAC GCGCTGGCGG ACGGGACGTT CTGCCGGCTC
GGCGAGGGGT CGCTGGATGT GGCGGCGTTC TTGGACGCGT TGCGGGAGCT GGCGTACGAA
GGGTGGATCG TGGTCGAGCA GGACGTGCCG GACCGTGGGC AGGATCTGGG GCAGATCATC
GCGGACATGC GGCACAACCG GGCGGTGCTG GCGGGGTTGG GGGTCTGA
|
|---|
| Protein sequence | MRVTEPPAPV WPVKVATAPV NFGIYSTANP FISASEYARI AVDCGYEGTD LGPHGYLDEV
LAADDSDLPL AGGWHDLRFG QNDGFAADLA ALEDTARLLH ARNHYPDMSS FAPKPTLACP
PSGPLDAAGW GLLVRQAYRA ASRCREHGLE PVFHHHLDTS IETPDDIDRL LELTELELCL
DTGHLLAAGG DPLAMLERWG DRVRHVHVKD ALADGTFCRL GEGSLDVAAF LDALRELAYE
GWIVVEQDVP DRGQDLGQII ADMRHNRAVL AGLGV
|
|---|
| |