Gene Caci_1598 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1598 
Symbol 
ID8332941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1812059 
End bp1812958 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content66% 
IMG OID644954748 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003112360 
Protein GI256390796 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.753929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCACCA TCCCCTTCGG TACGAAGCGG ACACGGCGGT GGCTGCCCTG GGCCTCCATC 
GCCGTGCCCA CCATCGGCTG GCTGGTGTTC GGTCTGTTCC CGTCGGTGTC GACCGTCTTC
TTCTCCTTCA CCGAATACTC CGGCTTCCCG GGCACGCCGC TGCACTTCTG CGGACTGTGC
AACTACCACA ACGCGTTCAA CAGCTCCTGG ACCGACTTCT CCACCTCCGT GACCGTCACG
CTGAAGTACG TCGCCGGGGT CACGATCCTG CAGATCACGA TCGGGCTCGG ACTGGCGCTG
CTGCTGCGGC ACCGGCGGCG CGGGTTCGGG TTCTACCGCG CGCTGATCTT CATGCCGCAG
GTGTTCTCCG TGACCATCGT CGGCGTGCTG TTCTCGCTGG TCTTCGACCC GCAGAACGGT
CCGGCGGAAC CGATGTACCA CGGGCTGTTC GGCTCCACCA GCGCGTTCCT CGGCGACCAG
ACCTGGGCGC TGTGGCTGGT CATCATGATC AACGTCTGGA TGTTCGCCGG CTACACCATG
CTGGTCTACA TCGCGGCGCT GCGGCGGATC CCGCCGGAGC TGTACGAGGC CGCCTCGCTC
GACGGCGCCG GACGGTTCCG CACCTTCCGC CACATCACCT GGCCGCTGCT GGCGAACGCC
ACGACGGTGA ACGTCTTCCT GACGGCGATG GGGTGTGTCG GTGAGTTCGC GCTCATCAGG
GTTCTGACCG ACGGCCACTA CGGCACGAAG ACGCTCGGCA TGTACATGTT CGACACCGCC
TTCGGCGTGA ACCCCTCGCT GGGCTACGGC TCGATGCTGG CGGTGGCGCA GTTCCTCATC
ACGCTGGTGA TCGGCAGCGT GCTGCTGTTC TTCCTGCGCC GACGGGAGGT GACGCTGTGA
 
Protein sequence
MSTIPFGTKR TRRWLPWASI AVPTIGWLVF GLFPSVSTVF FSFTEYSGFP GTPLHFCGLC 
NYHNAFNSSW TDFSTSVTVT LKYVAGVTIL QITIGLGLAL LLRHRRRGFG FYRALIFMPQ
VFSVTIVGVL FSLVFDPQNG PAEPMYHGLF GSTSAFLGDQ TWALWLVIMI NVWMFAGYTM
LVYIAALRRI PPELYEAASL DGAGRFRTFR HITWPLLANA TTVNVFLTAM GCVGEFALIR
VLTDGHYGTK TLGMYMFDTA FGVNPSLGYG SMLAVAQFLI TLVIGSVLLF FLRRREVTL