| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1173 |
|---|
| Symbol | |
|---|
| ID | 8332508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1321779 |
|---|
| End bp | 1323116 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644954320 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_003111939 |
|---|
| Protein GI | 256390375 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.75222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACG GTCCCTACGA GTCCTACGTG TACGCCTATC CGCACAAGAC GGCGTATCGG
CCGCTCGTGC CGAAGCCGCT GCTGTCCGAC GTCTGGCGCG GCGAGGGTCG CGATGCGCTC
TCCTTTTATA CGCATATCCC GTTCTGTGAA GTCCGCTGTG GTTTCTGCAA CCTGTTCACT
CGAACCGGCG CGCCGGAGTC GCTGACGACG GCGTACCTCG ACGCTTTGGA ACGGCAGGCG
ATCGCGGTCC GTGCGGCGCT GGACGAATCC GGTCCCGCGC CCCGCTTCGC CAACGCGGCG
ATCGGTGGCG GCACGCCGAC GTATCTGAGC CCTGATGAGC TTTCGCGGCT GTTCGACATC
GCCGAGAAGG TGGTCGGCGT CGGTCTCGGC GCGATCCCGT TGTCCGTCGA GGCGTCGCCG
GCGACCGCCA CCCCCGACCG GCTGACGGTG CTCGCCGAGC GCGGGACGAC GCGGCTCAGC
CTGGGCGTGC AGAGCTTCGA TGACGTCGAA GCCCGCTCGG CGGTGCGTCC GCAGAAGGCA
GCTGACGTCT TCGCCGCTCT GGACGCCGTC CGCGCCGCCG ACATCCCGGT GTTGAACGTC
GATCTGATCT ACGGCATCGA GGGGCAGACC CGCGAGTCTT GGCGGGCTTC CCTTCAGACA
GCTTTGCGCT GGATGCCGGA GGAGATCTAT CTCTATCCGC TTTATGTCAG ACCACTGACC
GGTCTCGGTC GACTGAACCT GAACCATGAC GCCGAGTGGG ACGCGCAGCG TTTGGATCTC
TACCGCTGCG GCCGCGATTT CCTGCTGGAG AACGGCTACG AGCAAGTGTC CATGCGGATG
TTCCGCCGCC TGGACGCGCC GGTCGTCGAG GGCGGCGAGG ACTACGCCTG CCAGACGGAC
GGCATGATCG GTCTGGGCTG CGGCGCACGG TCGTATACCG CGTCGCTGCA CTACTCCTTC
GACTACGCGG TCTCGGCGTC GGAAGTGCGC GGGATCATCG ACGAGTACGT TGCGACCACC
GACTTCAGCC GCGTCGAGGT CGGCTATCGG CTCGATGCGG ATGAGCAGGC ACGCAGGTTC
CTGATTCAGT CGCTGCTTCA AGCGGACGGG ATGGAGCGGG GCGACGCGGT TGAGCGCTTC
AGTGCGGAGC TGGCGTTGCT GAACGACCGC GGCTTCCTGG AGTCGGTGTC GGATCGGGCA
TCGGCTTCGG CATCGGCTTC AGGAGCAGAC GGTCGGCTGC GGCTCACCCC CGAAGGCCTC
GCATGGTCCG ATGCGGTCGG CCCGATGTTC TTCTCCGAGC AGGTGCGCGC CGCGATGCGC
GCCTACGAGC TGAAGTAG
|
|---|
| Protein sequence | MLNGPYESYV YAYPHKTAYR PLVPKPLLSD VWRGEGRDAL SFYTHIPFCE VRCGFCNLFT
RTGAPESLTT AYLDALERQA IAVRAALDES GPAPRFANAA IGGGTPTYLS PDELSRLFDI
AEKVVGVGLG AIPLSVEASP ATATPDRLTV LAERGTTRLS LGVQSFDDVE ARSAVRPQKA
ADVFAALDAV RAADIPVLNV DLIYGIEGQT RESWRASLQT ALRWMPEEIY LYPLYVRPLT
GLGRLNLNHD AEWDAQRLDL YRCGRDFLLE NGYEQVSMRM FRRLDAPVVE GGEDYACQTD
GMIGLGCGAR SYTASLHYSF DYAVSASEVR GIIDEYVATT DFSRVEVGYR LDADEQARRF
LIQSLLQADG MERGDAVERF SAELALLNDR GFLESVSDRA SASASASGAD GRLRLTPEGL
AWSDAVGPMF FSEQVRAAMR AYELK
|
|---|
| |