Gene Caci_1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1117 
Symbol 
ID8332452 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp1259742 
End bp1260365 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content66% 
IMG OID644954265 
ProductGPR1/FUN34/yaaH family protein 
Protein accessionYP_003111884 
Protein GI256390320 
COG category[S] Function unknown 
COG ID[COG1584] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0710546 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.454396 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGA CGACACCCAC CGGCCGGCCG GCGCCTGTAG CGCCCCCCGT CTCCGGCATC 
GCTATCGCTG ATCCCGCCCC ACTCGGACTC GCCGGTTTCG CCATGACGAC GTTCGTGCTC 
AGCTTTGTGA ACGCGAACAT CATCAAGGAG ACCGGGGCGG TGAACGTCGT CCTGGCCCTC 
GCGCTGTTCT ACGGCGGCGC CACGCAGCTG CTCGCCGGTA TGTGGGAGTT CAGGCGCGGC 
AACACCTTCG GCGCGACCGC GTTCGCCTCC TTCGGCGCCT TCTGGCTCAG CTACTGGGCC 
CTGGTCAAGC TCTCGCCCGC CAACGCCGGC GACATTCACC AGGCGATCGG CCTGTACCTG 
CTGGCCTGGT GCATCTTCAC CGCCTACATG ACCCTGGCGG CCCTGAAGAC GAACCTCGCG 
GTCCTGGCCG TCTTCGTCCT GCTGACCCTC ACCTTCCTCT TCCTGGCCAT CGGCGCCTTC 
ATGAACAACC CCTCCCCCGA CGCCATGACC AAGCTCGGCG GCTGGTTCGG CATCGTCACA 
GCAGCAGTAG CCTGGTACGC ATCCTCCGCC GCGGTAGTCA ACGCCACCCA CGGCAAAACA 
GTGCTACCCA CCTGGCCGAG ATGA
 
Protein sequence
MSETTPTGRP APVAPPVSGI AIADPAPLGL AGFAMTTFVL SFVNANIIKE TGAVNVVLAL 
ALFYGGATQL LAGMWEFRRG NTFGATAFAS FGAFWLSYWA LVKLSPANAG DIHQAIGLYL 
LAWCIFTAYM TLAALKTNLA VLAVFVLLTL TFLFLAIGAF MNNPSPDAMT KLGGWFGIVT 
AAVAWYASSA AVVNATHGKT VLPTWPR