| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0917 |
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| Symbol | rpoB |
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| ID | 8332251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 1064436 |
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| End bp | 1067912 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644954070 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003111690 |
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| Protein GI | 256390126 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.456862 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCGCCT CGCGCACCGC CCAGAACATC ACCAAGAACG CCGCCCGCCG CATCTCCTTC
GCGAAGATCA AAGAGCCCCT CGAGGTTCCG AACCTGCTCG CGCTGCAGAC GGAGTCCTTC
GACTGGCTCG TCGGCAACGC GACCTGGAAG GGTCGCGTCT CCGAGCAGCA GGCCGCCGGC
CTCGACGTGC CCACCACCTC CGGTCTGGAG GAGATCTTCG AGGAGATCTC CCCGATCGAG
GACTTCCAGG GCACCATGTC GCTGACGTTC CGCGACCACC GCTTCGAGCC CGCGAAGTAC
TCGATCGACG AGTGCAAGGA CCGCGATTTC ACCTACGCCG CCCCGCTGTT CGTGACCGCC
GAGTTCACGA ACAACGAGAC CGGCGAGATC AAGAGCCAGA CCGTGTTCAT GGGCGACTTC
CCGCTCATGA CCAACAAGGG CACCTTCATC ATCAACGGCA CCGAGCGTGT CGTGGTGACC
CAGCTGGTGC GCTCCCCGGG TCTGTACTTC TCGCAGGACA TCGACAAGAC CTCCGACAAG
GACGTCTTCA ACGCCAAGAT CATCCCCAGC CGGGGTGCCT GGCTGGAGTT CGAGATCGAC
AAGCGCGACA TGGTGGGCGT GCGCGTCGAC CGCAAGCGCA AGCAGCACGT CACCGTGCTC
CTGAAGGCTC TGGGCTGGGA CGATGCCCGG ATCCTGGAGG AGTTCGGGGA GTACGAGTCC
ATGCGCCAGA CGCTGGAGAA GGACCACACC GCCGGCCAGG ACGAGGCGCT GCTGGACATC
TACCGCAAGC TGCGCCCGGG CGAGCCGCCG ACGCGCGAGG CGGCCCAGAC CCTGCTGGAC
AACCTGTACT TCAACCCCAA GCGCTACGAC CTGGCCAAGG TCGGCCGCTA CAAGATCGAC
AAGAAGCTGG GGCAGGCCAG CGGCATCGAC AACACGGTGC TCACCGAGGA CGACATCGTC
AACGCGATCA AGTTCCTGGT CAAGCTGCAC GCCGGCGAGA CCGAGATGGA CCCGCAGGCC
GAGGGCATGC CGATGGTCGT CGTCGAGGAG GACGACATCG ACCACTTCGG CAACCGCCGC
CTGCGCAGCG TCGGCGAGCT GATCCAGAAC CAGGTCCGCA CCGGTCTGGC CCGCATGGAG
CGGGTCGTGC GCGAGCGCAT GACCACCCAG GACGTGGAGG CCATCACCCC GCAGACGCTG
ATCAACATCC GGCCGGTCGT GGCCTCCATC AAGGAGTTCT TCGGCACCAG CCAGCTCTCG
CAGTTCATGG ACCAGACCAA CCCGCTGTCC GGGCTGACGC ACAAGCGCCG CCTGAACGCG
CTGGGTCCCG GCGGTCTGTC CCGGGAGCGG GCCGGCTTCG AGGTGCGCGA CGTGCACCCC
TCGCACTACG GCCGCATGTG CCCGATCGAG ACCCCGGAAG GCCCGAACAT CGGCCTGATC
GGCTCGCTGG CCTCCTACGG CCGGATCAAC GCCTTCGGCT TCATCGAGAC CCCCTACCGC
AAGGTCGAGG ACGGCCGGGT CACCGACCAC ATCGACTACC TCACCGCGGA CGAGGAGGAC
CGGTACGTCG TGGCCCAGGC CAACGCCCCG GTCCGGGACG ACGGCTCCTA CACCGACGAG
CGCGTGCTGT GCCGCCGCAA GGGCGGCGAG ATCGAGATGA TGGCTCCGGC CGACATCGAC
TACATGGACG TCTCCCCGCG CCAGATGGTG TCGGTGGCGA CCGCGATGAT CCCGTTCCTG
GAGCACGACG ACGCCAACCG GGCCCTGATG GGCGCGAACA TGATGCGCCA GGCCGTGCCG
CTGCTGCAGT CGGACTCCCC GTACGTGGGA ACCGGCATGG AGTACCGCTG CGCGGTCGAC
GCCGCCGACG TGGTCACCGC CGACAAGGGC GGCGTGGTCA CCGAGGTCTC CGCCGACCTG
GTCACCGTCG CCAACGACGA CGCGACCACC AGCGTGTACC GGATCGCCAA GTTCCGCCGC
TCCAACCAGG GCACCTCCTT CAACCAGAAG GTGGTCGTCG CCGAGGGCGA GCGGGTGGAG
GTCGGCTCGG TGCTGGCCGA CGGCCCGTGC ACCCAGGACG GCGAGATGGC CCTGGGCAAG
AACCTGCTCG TGGCGTTCAT GCCGTGGGAG GGCCACAACT ACGAGGACGC GATCATCTTG
TCGCAGCGCC TCGTGCAGGA CGACGTCCTG TCCTCGATCC ACATCGAGGA GCACGAGGTC
GACGCCCGGG ACACCAAGCT GGGCCCGGAG GAGATCACCC GGGACATCCC GAACGTCTCC
GAGGAGGTCC TGGCCGACCT CGACGAGCGC GGCATCATCC GCATCGGCGC GGACGTCGTC
CCCGGCGACA TCCTGGTCGG CAAGGTCACG CCCAAGGGCG AGACCGAGCT CACCCCCGAG
GAGCGGCTGC TGCGCGCGAT CTTCGGCGAG AAGGCCCGCG AAGTCCGCGA CACCTCGCTG
AAGGTGCCGC ACGGCGAGCA GGGCAAGATC ATCGGCGTCC GCATCTTCGA CCGCGACAGC
GGCGACGAGC TGCCGCCGGG CGTCAACCAG CTGGTCCGGG TGTACGTGGC GCAGAAGCGC
AAGATCACCC ACGGCGACAA GCTGGCCGGC CGGCACGGCA ACAAGGGCGT CATCGCCAAG
ATCCTCCCGG TGGAGGACAT GCCGTTCCTG GAGGACGGCA CCCCGGTCGA CATCGTGCTG
AACCCGCTGG GCGTGCCCAG CCGCATGAAC CCCGGCCAGG TGCTGGAGAC CCACCTCGGG
TGGATCGCCG CCACCGGCTG GGACGTCGGG GAGGGCAACG CCGAGTGGCA GGAGCGCCTG
CGCTCCATCG GCGCGGACTC GGCCGCACCG AAGACCAAGG TCGCGACCCC GGTCTTCGAC
GGCGCCCGCG AGGACGAGAT CACCGGTCTG CTGGGGAACA CCCTGAAGAC CCGCGACGGG
GTCCGGCTGG TGGACAGCAC CGGCAAGGCC CGGATGTTCG ACGGCCGCTC CGGCGAGCCG
TTCCCGTACC CGATCTCGGT CGGCTACATG TACATCCTGA AGCTGCACCA CCTGGTGGAC
GACAAGCTGC ACGCGCGCAG CACCGGCCCG TACTCGATGA TCACGCAGCA GCCGCTGGGC
GGTAAGGCCC AGTTCGGCGG CCAGCGGTTC GGCGAGATGG AGGTGTGGGC CCTGGAGGCC
TACGGCGCCG CGTACGCGCT GCAGGAACTG CTCACCATCA AGTCCGACGA CGTGCTCGGC
CGCGTGAAGG TCTACGAGGC CATCGTCAAG GGCGACAACA TCCCCGAGCC CGGTATCCCG
GAGTCGTTCA AGGTGTTGAT CAAGGAAATG CAGTCGCTGT GCCTCAACGT GGAGGTCCTC
AGCAAGGACG GCACCATGAT CGAGCTCCGC GACACCGACG AGGACGTGTT CCGCGCGGCC
GAGGAACTCG GCATCGACCT GAGCCGGCGT GAGCCGTCCA GTGTCGAAGA GGTCTGA
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| Protein sequence | MAASRTAQNI TKNAARRISF AKIKEPLEVP NLLALQTESF DWLVGNATWK GRVSEQQAAG
LDVPTTSGLE EIFEEISPIE DFQGTMSLTF RDHRFEPAKY SIDECKDRDF TYAAPLFVTA
EFTNNETGEI KSQTVFMGDF PLMTNKGTFI INGTERVVVT QLVRSPGLYF SQDIDKTSDK
DVFNAKIIPS RGAWLEFEID KRDMVGVRVD RKRKQHVTVL LKALGWDDAR ILEEFGEYES
MRQTLEKDHT AGQDEALLDI YRKLRPGEPP TREAAQTLLD NLYFNPKRYD LAKVGRYKID
KKLGQASGID NTVLTEDDIV NAIKFLVKLH AGETEMDPQA EGMPMVVVEE DDIDHFGNRR
LRSVGELIQN QVRTGLARME RVVRERMTTQ DVEAITPQTL INIRPVVASI KEFFGTSQLS
QFMDQTNPLS GLTHKRRLNA LGPGGLSRER AGFEVRDVHP SHYGRMCPIE TPEGPNIGLI
GSLASYGRIN AFGFIETPYR KVEDGRVTDH IDYLTADEED RYVVAQANAP VRDDGSYTDE
RVLCRRKGGE IEMMAPADID YMDVSPRQMV SVATAMIPFL EHDDANRALM GANMMRQAVP
LLQSDSPYVG TGMEYRCAVD AADVVTADKG GVVTEVSADL VTVANDDATT SVYRIAKFRR
SNQGTSFNQK VVVAEGERVE VGSVLADGPC TQDGEMALGK NLLVAFMPWE GHNYEDAIIL
SQRLVQDDVL SSIHIEEHEV DARDTKLGPE EITRDIPNVS EEVLADLDER GIIRIGADVV
PGDILVGKVT PKGETELTPE ERLLRAIFGE KAREVRDTSL KVPHGEQGKI IGVRIFDRDS
GDELPPGVNQ LVRVYVAQKR KITHGDKLAG RHGNKGVIAK ILPVEDMPFL EDGTPVDIVL
NPLGVPSRMN PGQVLETHLG WIAATGWDVG EGNAEWQERL RSIGADSAAP KTKVATPVFD
GAREDEITGL LGNTLKTRDG VRLVDSTGKA RMFDGRSGEP FPYPISVGYM YILKLHHLVD
DKLHARSTGP YSMITQQPLG GKAQFGGQRF GEMEVWALEA YGAAYALQEL LTIKSDDVLG
RVKVYEAIVK GDNIPEPGIP ESFKVLIKEM QSLCLNVEVL SKDGTMIELR DTDEDVFRAA
EELGIDLSRR EPSSVEEV
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