| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0562 |
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| Symbol | |
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| ID | 8331890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 646141 |
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| End bp | 647436 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644953714 |
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| Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003111340 |
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| Protein GI | 256389776 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.112757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGACG CCGACGACGT CGCGCGGGCG GTCGCCGACG CGCATCGCCG CGAGTGGGCC
TTCGTGCTCG CCGCGACGGT GCGCGTCGCG CAGGACTTCG ACCTGGCCGA GGAATGTGTC
CAGGAGGCGT ACGCCGCCGC GCTGTCGGCG TGGAGGCGTG ACGGCGTTCC CGCCAAGCCC
GCGGCGTGGC TGACGACCAC TGCCAAACGG CGCGCGATGG ACGCCATCCG CCGCGAACGC
ACGCTCCGCT CGAAGCTCCC ACTCCTGATC GAGCTGGAAG GTCGCGAAGG TCAGGAAGAC
CAAGAAGCCC GAGAAGGCCA ACAGCACCAC CAAGACCAAG CCGACCCGGA AGCCACCGTC
CCCGACGAAA GGCTCCGCCT CATCTTCACC TGCTGCCATC CCGCGCTCGC CCAAGAAGCG
CAGCTGGCGC TGACCCTGCG GCTGGTCTGC GGCCTGTCGA CGCCGGACAC CGCGCGGATG
CTGCTGGTCT CCGAATCGAC GATGGCGGCC CGGATCACCC GCGCGAAGAA GAAGATCTCC
GCGGCGCGCA TCCCCTTCCG TGTGCCGCGC GCGGCGGAGC TGCCCGACCG GCTCGGCGCC
GTCCTCGGGG TCGTCCACCT GCTGTTCACC GCCGGTCACA CCGCGCCTTC GGGCCCTGAT
CTGCTGCGCA CGGAGCTGAC CGACCGAGCC TTGTTTCTGG CGCGCACCCT CCGTGACCTC
ATGCCCGACG AGCCCGAGGT GCGCGGCCTG CTCGCGCTGT TCCTCGTCAC CGACACCCGG
CGCGCCACCC GCACCGACGC CGACGGCCGT CTACTCCGCC TGGAAGAGCA GGACCGCTCC
CAGTGGGACG GGGAGGCTCT GGCCGAGGCG CACGAACTGA TCGTCGCCGG ACTGCGCGGC
GGCCGTGCCG GGCGCTATCT CCTGCAGGCG GCGATCGCAT CGCTGTACGC GCAGGCGCCG
ACGTACGAGG AGACGGACTG GTCGCAGCTC GTGGTCCTGT ACGACCGGCT CCTCGCCGTC
TGGCCGTCGC CGACCGTGGC GCTCAACAGA ACCGTGCCGC TGTCGATGGC TCAGGGTCCG
GAGAAAGCTT TCGACGCCGT CGCTGAGTTG GAGAAAGACG ATCGGCTGGC GCGGTATCCG
TACCTGCCGG CGATCAAGGC GGATCTGTGG CGCCGTCTCG GCCGCGACGC GGAAGCGACG
AAGGCCTACC GCCAAGCGTT GGAGCTCACC GACAACGAAG CCGAGCGGGC TTTCCTCGCC
GGTCGAGCAG GGGAAACCGG GCCGCCTGTT CGATAG
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| Protein sequence | MTDADDVARA VADAHRREWA FVLAATVRVA QDFDLAEECV QEAYAAALSA WRRDGVPAKP
AAWLTTTAKR RAMDAIRRER TLRSKLPLLI ELEGREGQED QEAREGQQHH QDQADPEATV
PDERLRLIFT CCHPALAQEA QLALTLRLVC GLSTPDTARM LLVSESTMAA RITRAKKKIS
AARIPFRVPR AAELPDRLGA VLGVVHLLFT AGHTAPSGPD LLRTELTDRA LFLARTLRDL
MPDEPEVRGL LALFLVTDTR RATRTDADGR LLRLEEQDRS QWDGEALAEA HELIVAGLRG
GRAGRYLLQA AIASLYAQAP TYEETDWSQL VVLYDRLLAV WPSPTVALNR TVPLSMAQGP
EKAFDAVAEL EKDDRLARYP YLPAIKADLW RRLGRDAEAT KAYRQALELT DNEAERAFLA
GRAGETGPPV R
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