Gene Caci_0429 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0429 
Symbol 
ID8331756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp478313 
End bp478825 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content68% 
IMG OID644953595 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003111222 
Protein GI256389658 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.778555 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGCCGGT CCAAGGATTC CGGAGAGAAG AGTCGGGCGG CGTCCGACTT GTTCACCGAT 
CTCTATCCCG GCCTCGCGGG CTGGTGCCGC CGTCTCGTCG ACGACGACGG CACCGCCCAC
GAGATCGCCT CCGAGGCGTT CACGCGCCTG TGGGGGCACT GGACCTCGGT GCGGGAACCG
CGGGGCTTCC TGTACGTGAC GGCCGCGAAC CTGGTCCGCG ACCACTGGCG CAAGATGGAC
CGCGAACGCC GGGCGATCCG GCAGGTGAGC GCGGAGGTCG AGCGCGCCGC GCACCACGAC
GGCGCCGACG CGTCCGTCTC GGTGCGGATG CTGGTGCGGT CGCTCCCGGA GCGGCTGCGG
ACGCCTGTTC TGCTGTACTA CTACGCCGAT CTTCCGATCC GCGAGATCGC CCAGCTGACC
AGGCGCAAAG AAGGAACCGT CAAATCCGAT CTACACGCGG CACGGGAACT CCTGCGCGCC
GGACTCGGAG GACATCTTGA TCACGCTCAT TGA
 
Protein sequence
MSRSKDSGEK SRAASDLFTD LYPGLAGWCR RLVDDDGTAH EIASEAFTRL WGHWTSVREP 
RGFLYVTAAN LVRDHWRKMD RERRAIRQVS AEVERAAHHD GADASVSVRM LVRSLPERLR
TPVLLYYYAD LPIREIAQLT RRKEGTVKSD LHAARELLRA GLGGHLDHAH