| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4983 |
|---|
| Symbol | |
|---|
| ID | 3520351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 5293887 |
|---|
| End bp | 5294723 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637287422 |
|---|
| Product | TPR domain-containing protein |
|---|
| Protein accession | YP_271622 |
|---|
| Protein GI | 71279889 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAG CGATTTTAAC AACGGCTTAT GCAAAAATTA TAGGCCTTGA TTTTTCGTAT
CGAAAAGTAA GCACTCTACC CATATTCACT AAAAAAGAGG ATGTTATTTT ATCCTCTTCA
CATGTACAAA CAATAATTTA CGATCCTAGT TTTATCGCTG ATCAAAATAC TTTTTACCTC
GCAAATCCTG CGGTGGTTAT TGATTATTTC CCAAGTAAAA GTCATCGTTC TGGGATAAAG
TTTTCGTTGG AGACCTTTCT CGCTATGTAT TATAAGAATA TTGCCGCCGA TGCTTTAGCA
GATAAAGATT TAAATAAATC ATTTTTATAC GCAAATAAAG CTTACCAATT AGATACTGAC
AATATTGAAA CAATTAACCT ATTAGCTGTT ATCCACAGAA GATCAGGCGA CTTACAAACA
GCAGAGGCGA TATATAAAAC AGGTATGGAC AAAGGGCAAA CGAATATAGC GCTATTAAGT
AACTATATTA TGTTACTCAA GTCTCAACGG CGTATGGACG AAGTTAACAC CCTACAAGAC
AAACTAAACC AACTAGATGA CCCAGACCCG TATCAATGGT TAGGAGAGGC TTATACAGCG
AAAAATGTTG GCAATATTAA ACAAGCCGAA ATTTATTTTA AGAAAGCATT GTCAAAGGCA
CCATACCTCA ACCAAGCGTA TATGGGACTT TATAAAATTT ATATAAAACA AAACAAACTA
AAAAAGGCCC AAACAATGCT CGTTAAAGCA TTAGAATGGA CCTATGAGCT TGATGAAAGA
AAGCTATACA AATATAAGCT TTATAATATT GAACATAACA TAGCAGCAAT TAATTAA
|
|---|
| Protein sequence | MSLAILTTAY AKIIGLDFSY RKVSTLPIFT KKEDVILSSS HVQTIIYDPS FIADQNTFYL
ANPAVVIDYF PSKSHRSGIK FSLETFLAMY YKNIAADALA DKDLNKSFLY ANKAYQLDTD
NIETINLLAV IHRRSGDLQT AEAIYKTGMD KGQTNIALLS NYIMLLKSQR RMDEVNTLQD
KLNQLDDPDP YQWLGEAYTA KNVGNIKQAE IYFKKALSKA PYLNQAYMGL YKIYIKQNKL
KKAQTMLVKA LEWTYELDER KLYKYKLYNI EHNIAAIN
|
|---|
| |