| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4673 |
|---|
| Symbol | potH |
|---|
| ID | 3519327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4939438 |
|---|
| End bp | 4940391 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637287112 |
|---|
| Product | putrescine ABC transporter, permease protein |
|---|
| Protein accession | YP_271317 |
|---|
| Protein GI | 71279164 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAG TAACCGGCAC TTTTTGGCTC GGTCGTTATG ACACAGTCAA AACTCGATTT
AGTTCATTGA AAAAAATTCG CTGGGGTAGA TACTCTGTTA TCTCTATCCC TTCCTTATGG
TTAGCCTTAT TTTTCTTTAT TCCCTTTTTA GTTGTGTTTA AAATTTCACT GGCTGAATCT
GCTATAGCTG TACCTCCTTA TACAGATATG TTTGCTTGGA ATGTAGAAGA TGCAATTATT
GATGTAAAAA TAAAACTTGG CAACTATTTA TACCTTTTTG AAGACTCCTT TTATTTAGAC
GCCTATTTAA GTTCAGTTAA GATCGCCGCG GTCTCTACTT TTTTTACTTT ATTAATCGGC
TTTCCAATGG CCTATTTTAT TGCAAGTAAA ACAGGCACCA TGCGAACGCT TTTATTAACG
CTTGTTATCT TACCTTTTTG GACTTCATTT CTATTACGAG TCTATGCGTG GATGGGCTTT
CTTAAAAAGA ATGGTATTGT TAATGAGTTT TTACAAGGCA TTGGCCTTAT TGACCAACCT
ATTCAAATGT TACAAACCGA CTTTGCTGTA TACATTGGTA TTGTCTACAC CTACTTACCT
TTTATGATCT TACCTTTGTA CACCACCTTA GAAAAACTAG ATGGTAGTTT GATTGAAGCG
TCTAAAGATC TGGGTGCAGG ACCAATTAGA ACCTTTTTCT TGATTACCTT ACCCATGTCT
ATGCCCGGTA TTTTAGCTGG CTGTTTATTA GTGTTCATAC CTGCCGTTGG AGAATTTGTT
ATTCCTGCCC TATTAGGTGC GTCTGACACG TTAATGATAG GACGAGTGCT TTGGGATGAG
TTCTTCCAGA ATAGAGACTG GCCAATGGCC TCAGCAGTGG CGACCATGAT GTTACTTATT
TTAGTTGTTC CTATAATGTT TTTACGTAAT GGCAAAAAAG AAGGAGCTGA ATAA
|
|---|
| Protein sequence | MSKVTGTFWL GRYDTVKTRF SSLKKIRWGR YSVISIPSLW LALFFFIPFL VVFKISLAES
AIAVPPYTDM FAWNVEDAII DVKIKLGNYL YLFEDSFYLD AYLSSVKIAA VSTFFTLLIG
FPMAYFIASK TGTMRTLLLT LVILPFWTSF LLRVYAWMGF LKKNGIVNEF LQGIGLIDQP
IQMLQTDFAV YIGIVYTYLP FMILPLYTTL EKLDGSLIEA SKDLGAGPIR TFFLITLPMS
MPGILAGCLL VFIPAVGEFV IPALLGASDT LMIGRVLWDE FFQNRDWPMA SAVATMMLLI
LVVPIMFLRN GKKEGAE
|
|---|
| |