Gene CPS_4567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_4567 
SymbolmshD 
ID3520142 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand- 
Start bp4821386 
End bp4821973 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content36% 
IMG OID637287007 
ProductMSHA pilin protein MshD 
Protein accessionYP_271215 
Protein GI71279682 
COG category 
COG ID 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.490288 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTATTTA AATATTCTGA AACAGCGACT CCTTATTCGA AACATACCTC AGGCTTTACC 
TTAATAGAGA TAATTATTGG TATAGTGGCT TTATCAATTT CACTATCAAT TGTTTCAACA 
CTTATAGCCC CTGCAGAGCA GAAAAGTGCT GACCAAATAC ATCAAGTTAA AGCTGCTGAG 
TTAGGACAAA GCTTTTTAAA TGATATAAGC GCTCGAGCTT TTGACCAAAA CTCAGATATG 
GCGGGCGGAT TAGTTAGGTG TGGGGAGCCG AATGATGGTT CAAATCCATG TACAGATTCC 
GGAAAACTTG GTCCTGAAGA TGGCAATGAT GGACGACCTA ATAACGGAGA GGTTAAGCGT 
GGTTTATTTA ATGACGTTGA TGATTTTCAT AATTATTCTG AGAAATTTAC CGGCAACGAT 
GAAATATTAG CAAAGGGGTA TAATAATTTT ACCATTGATA TAAAGGTGAT TTATGATGGT 
TTATCTTTGG GGTTATCAAA TAATAGAAGC GCTAAAAAAA TTACCGTTTC TGTTACTACG 
CCATTAGGTA CAGAAATTCA ATTTGCCACT CATAAGGCAA ACTTTTAA
 
Protein sequence
MLFKYSETAT PYSKHTSGFT LIEIIIGIVA LSISLSIVST LIAPAEQKSA DQIHQVKAAE 
LGQSFLNDIS ARAFDQNSDM AGGLVRCGEP NDGSNPCTDS GKLGPEDGND GRPNNGEVKR 
GLFNDVDDFH NYSEKFTGND EILAKGYNNF TIDIKVIYDG LSLGLSNNRS AKKITVSVTT 
PLGTEIQFAT HKANF