| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4308 |
|---|
| Symbol | |
|---|
| ID | 3520902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 4536677 |
|---|
| End bp | 4537369 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637286749 |
|---|
| Product | short chain dehydrogenase/reductase family oxidoreductase |
|---|
| Protein accession | YP_270958 |
|---|
| Protein GI | 71280436 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACTA ATACACGCAA TACTATCGTA ATCACTGGTG CCAATCGTGG CATCGGGTAT
GCCATGGCTA AAATTTTTCA ACAACGTGGT GATATCATTT ATGCACTTTG TCGTCAAAGC
TCTAAGGATT TAGATGCACT TGGTGTCAAT GTGGTTGAGG AAATTGATAT TGCAACCCAG
GTAGGTATAG AGAAAGCGGT AACATCTCTC AACGGTATCA ACATTGATTT ATTGATCAAC
AATGCGGGTA TTTTACGTGA TGAGCAACTT AGTGATTTAA ACAAAGACAC CATTATTGAG
CAATTTAATG TTAACGCGCT TGCGCCACTC TGTTTGAGTC ACGCTTTACT TTCTAACTTA
TCTTCAGGTA GTAAAATTGG CTTAATCACC TCTAGAATGG GTTCTGTCAC TGATAATACT
TCAGGAGGAA GATATGGGTA CCGCATGTCA AAAGCGGCGC TTAATATCGC GTCAGTATCA
TTGGCAAGAG ATCTCGATGA TAAAAATATT GCAGTCGGGA TTTATCATCC TGGTTATGTA
CAAACCGAGA TGGTAAATCG CGATGGCGTT TTGAGTAATG GTGACATTAG CGCGAGCGAA
GCAGCTGAGC GACTAATTGC CTTAATGGAT AACTTATCCA TGGCAGATTC AGGTGTATTT
AAGCACTCAA ATGGCGAAAC ATTACCTTGG TAA
|
|---|
| Protein sequence | MSTNTRNTIV ITGANRGIGY AMAKIFQQRG DIIYALCRQS SKDLDALGVN VVEEIDIATQ
VGIEKAVTSL NGINIDLLIN NAGILRDEQL SDLNKDTIIE QFNVNALAPL CLSHALLSNL
SSGSKIGLIT SRMGSVTDNT SGGRYGYRMS KAALNIASVS LARDLDDKNI AVGIYHPGYV
QTEMVNRDGV LSNGDISASE AAERLIALMD NLSMADSGVF KHSNGETLPW
|
|---|
| |