| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3950 |
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| Symbol | |
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| ID | 3523052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4132461 |
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| End bp | 4134161 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637286396 |
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| Product | response regulator/GGDEF domain-containing protein |
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| Protein accession | YP_270608 |
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| Protein GI | 71282577 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAACACA TGAAAGTATT AATTGTTGAT GATGATATCG TTGACAGAGA GCTCATAAAA
AGAACGTTAA AACGAAGTGA TATTAGTTGT AATATTACTG AAGTTGAATC CGTGGATGAT
GCTCTGAAGA ATCTACAAGA CTCTTCTTTC GATGCGATAT TGCTCGATTA TAACTTACCG
CAACGAAACG GGATTGAGTT ACTTTTAGAA ATAAAAGGCG ATCCAAATAG GCATGATACT
GCTGTAATAA TGATGAGCAC ATCAAAAGAA GATGAGTTAG CACTTAATTG TATTAATGCA
GGAGCCCAAG ATTTTCTGGT TAAAACTGAG ATAAACGTCT TTCGATTACA AAGGGCGATA
GTCAATGCAC AAGCACGCTC AGACTTGGAA AAAAGACTAT ATCAAAGTTA CCAGCGTACT
AAAGAACTTG CAGAGCATGA TAGCTTAACC GGTCTAGCCA ACCGTTATTA TTTTGATGAA
TCCTTAGTAA AAGATATTAA GAGTAACCAA AGAGAAAAGA AAATCCTCGC ATTGTTATTA
ATAGACTTGG ATAATTTTAA ATATGTAAAT GATAACTTTG GTCATGATAT TGGTGATAAA
TTGTTAATTG AGGTGGTTAA ACGCATAAGT AACTGTTTAC GTGGTAATGA ATTATTTGCG
CGTTTAGGTG GAGATGAATT CGCCATTACA TTAACGCGTC TACCATCCAT TAATGGAGCT
AGTATTGTTT CTCAGCGCAT TATCAATGCG TTACGTGAAC CTTTTCAAAT CGATAATCAT
TGGATTCAAT CGGGTGCCAG TATCGGCATT TCCACATGTC CGTGGGACAG TTCAAATACT
AAGGAATTGT TTAAATTCGC TGATATTGCA ATGTATCGAG CTAAGAATAA AGGCCGCAAT
CAATTTTCAT TCTTTGAAGA AGAAATGCAA AATGAGTTTC TAGAGCAATT TAAGATTGAA
ACTCAACTAA GATCAGCAAT AATGAATGAC GACTTTTATT TACACTATCA ACCAGTCATA
GATGCTAAAA GTAAAACAAT AACAGGGGTG GAGGCACTAA TTCGATGGAA TATCGACGGT
GATATGATCA GCCCAGACAA GTTCATCCCG ATTGCTGAAA AGTCTCGACT CATTATTGAT
ATTGGTAAAT GGGTAATACA ACAAGCAATA AAACAGCTTA GCCTTTGGAA CAAAAATCGA
AGCTCGCCAC TAACCATGGC AATTAATTTT TCTTCAGTGC AGCTAGCGGA TGAATATTTA
TTTGATTTTA TTCGCGACTG TTTAAGTCAG CATAATGTTG CTGCTCATTT AATTGAAGTG
GAATTGACTG AAACAGCTTT AATTATTGAG CCAGAAAAGA CAGTTAAAAT TATTCAAGGA
ATAAGTGACT TAGGCTGTAA AGTCTCACTT GACGACTTTG GCACTGGCTT TTCATCTTTA
TCACACTTAC ATAGCTTTCC AATTAATATT GTTAAAATAG ATAGAACATT GATGCCGAAT
GCTTCTTCGT CAGAAAAAGT TAAGCAGCTA TTAAGCGGTT TAGTTCTTAT GATCAAGTCG
CTAGATTTAC AGATTGTTGC TGAAGGCGTT GAAACAGAAA GTGACTTAAA TTTATGTGTG
AAACTGGGTA TAGGTAAAAT CCAAGGTTTT TATTTTGATA AGCCTTTATC TCCTTTTGAT
TTAGAAAGAA AATATTTATA A
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| Protein sequence | MQHMKVLIVD DDIVDRELIK RTLKRSDISC NITEVESVDD ALKNLQDSSF DAILLDYNLP
QRNGIELLLE IKGDPNRHDT AVIMMSTSKE DELALNCINA GAQDFLVKTE INVFRLQRAI
VNAQARSDLE KRLYQSYQRT KELAEHDSLT GLANRYYFDE SLVKDIKSNQ REKKILALLL
IDLDNFKYVN DNFGHDIGDK LLIEVVKRIS NCLRGNELFA RLGGDEFAIT LTRLPSINGA
SIVSQRIINA LREPFQIDNH WIQSGASIGI STCPWDSSNT KELFKFADIA MYRAKNKGRN
QFSFFEEEMQ NEFLEQFKIE TQLRSAIMND DFYLHYQPVI DAKSKTITGV EALIRWNIDG
DMISPDKFIP IAEKSRLIID IGKWVIQQAI KQLSLWNKNR SSPLTMAINF SSVQLADEYL
FDFIRDCLSQ HNVAAHLIEV ELTETALIIE PEKTVKIIQG ISDLGCKVSL DDFGTGFSSL
SHLHSFPINI VKIDRTLMPN ASSSEKVKQL LSGLVLMIKS LDLQIVAEGV ETESDLNLCV
KLGIGKIQGF YFDKPLSPFD LERKYL
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