| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3740 |
|---|
| Symbol | |
|---|
| ID | 3520354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3903342 |
|---|
| End bp | 3905141 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286187 |
|---|
| Product | putative endoglucanase A |
|---|
| Protein accession | YP_270407 |
|---|
| Protein GI | 71279892 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.821502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCAT TACTTAATAA CTTAGTGGTA AAAACTAAAG TGGATGAACT AATGTCAAAT
ATGACATTAG CACAAAAAAT TGGACAAATG ACACAAGCTG AACGGCAAAG CTGTACGCCC
GCAGAAGCAA AAAAGTTTCA TTTAGGTTCA GTTATGTGTG GTGCGGGCTC TACCCCTGGG
GAAAACAAAC TTAAAGATTG GTTAACAATG GCTGACAGCT ATTGGCAAAG CTCATCAGTA
AAAGATGCAT GTCATCATGG CATACCCTTA CTTTTCGGGG TAGATGCTAT TCATGGTCAT
AATAACCTTT GTCAAGCCAC TATTTTTCCT CATAATATCG GCTTAGGCGC TGCTAACGAT
CCCGCACTGA TTAAAGAAAT AGCCATCATT ACCCGTAAAG AAGTATTGGC CAGTGGCCTT
GACTGGACCT TTGCACCAAA TCTTGCGGTT GCAAAAAACC AGCATTGGGG TCGGTTTTAC
GAAAGTTTTT CACAATCACC CGATATAACT AATAAATATG TCAATAACAT TATTACGGGA
CTGCAAAATC AACTACACAC CGAAGGTATT CTCGCTTGTG CAAAACATTG GGTTGGCGAC
GGAGCAACGT CTTACGGTAT TGATCAAGGT GATGCCAAAA TTTCGTGGCA AGTGTTAAAT
AAAACTCATA TAAGTCCATA CATCACAGCG ATTAACTCGG GAGTGATGAC GGTCATGGCA
TCGTTCAATA GCTGGAATGG TGACAAATGC CATGGCCATA AGTTTCTACT TACTGATATT
TTAAAAAAAC AGCTTAAGTT CTCTGGTTTT GTCGTCTCCG ACATGAACGG CATTGACTAT
CTTTCAGACG ATTTCTACTT ATCAATTGCA CAAGGCGTAA ATTCGGGCAT TGATATGTTT
TTGGTTTCAG AAAACTGGAA ACAATTTATT CGATACTTAA GTAACCACGT AGAATTAGGG
ACAGTATCAA TTTCAAGAGT TAATGACGCT GTACGTAGAA TTCTTACAGT AAAAGTCGCA
ATGGGCTTAC TTGAAGCCCC TAAACCAAGT AAACGAAAAT GGGCAAATGA TAATAGCTTT
GGCTCTATGG AGCACAGAGA AGTTGCACGT AAAGCCGTTA GAAAATCACT CGTTTTACTT
AAAAACCATC AAAACACACT ACCTTTAGAT AAAGCGGCAC GTATTTTAGT AACAGGAAAA
AATGCTAATA ACATTGGTCA TCAATGTGGT GGATTTACAA TAGCTTGGCA AGGTGTTTCA
GGAAATGATG AGTTTGAGCA AGCAACATCG ATATGGCACG GTATTAAAAA AATTGCACCT
AATGCGTTTT TAAGAGAACA AGTTGAACAT GTAAATGCAA ATGATCACGA TGTTGCTATT
GTAGTCATTG GTGAAACCCC CTACGCTGAA GGATTTGGTG ATATTAGAAA TGACGATAAT
CTTATTATAG AAGCAGGATC ACAAATAAAT GGTCAAATTA ATGTTTCAGA GCCTTATGGT
AGCACGATAG AATTACAAAG CTTACACTCG GAAGATTATG CAACAATTAA AGAACTTACT
GATAAAGGAT TACCTGTCGT TGTCATTTTA ATATCGGGTA GAACACTAAT TATTAATTCA
GAACTTGAAG AGTCAGCAGC ATTTGTTGTC GCTTGGTTGC CTGGTACTGA AGGACAAGGA
ATTAGTGATG TTATATTTGG AGATGTTAAT TTTCAAGGTA AACTATCCTT TGATTGGCCT
AAAAACACCG TAACAAGCTC TTTGCCACTA TTCCCTCAAG GTTTTGGATT ACATTATTAA
|
|---|
| Protein sequence | MHSLLNNLVV KTKVDELMSN MTLAQKIGQM TQAERQSCTP AEAKKFHLGS VMCGAGSTPG
ENKLKDWLTM ADSYWQSSSV KDACHHGIPL LFGVDAIHGH NNLCQATIFP HNIGLGAAND
PALIKEIAII TRKEVLASGL DWTFAPNLAV AKNQHWGRFY ESFSQSPDIT NKYVNNIITG
LQNQLHTEGI LACAKHWVGD GATSYGIDQG DAKISWQVLN KTHISPYITA INSGVMTVMA
SFNSWNGDKC HGHKFLLTDI LKKQLKFSGF VVSDMNGIDY LSDDFYLSIA QGVNSGIDMF
LVSENWKQFI RYLSNHVELG TVSISRVNDA VRRILTVKVA MGLLEAPKPS KRKWANDNSF
GSMEHREVAR KAVRKSLVLL KNHQNTLPLD KAARILVTGK NANNIGHQCG GFTIAWQGVS
GNDEFEQATS IWHGIKKIAP NAFLREQVEH VNANDHDVAI VVIGETPYAE GFGDIRNDDN
LIIEAGSQIN GQINVSEPYG STIELQSLHS EDYATIKELT DKGLPVVVIL ISGRTLIINS
ELEESAAFVV AWLPGTEGQG ISDVIFGDVN FQGKLSFDWP KNTVTSSLPL FPQGFGLHY
|
|---|
| |