| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3679 |
|---|
| Symbol | |
|---|
| ID | 3519865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3823993 |
|---|
| End bp | 3824949 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637286127 |
|---|
| Product | RNA pseudouridine synthase family protein |
|---|
| Protein accession | YP_270347 |
|---|
| Protein GI | 71279408 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTAG ATAACAAGTG TTCAGACACC CAAGGTCAAA ACCCGACTCA AAACCATGAA
AAGTTTGAAT GGCATATTAA AATTGACGAA CAAGTTAATA CTACTGCCAT TGCATTATTA
GAAAACTATG GTTATGAGCA AAATATTTCT TTGTCAAAAG CGCAGCTAAA ACAGGCAATA
ACTAAAGGCG CATTATGGTT AACGCCTGCT AAAAATAAAA AACAAACACA GCGACTACGC
CGCATTAAGA AGCAGTTAGT AAAAGGCGAT GAACTGCACT TTTATTTTAA TAGTGAAGTG
CTCTCATCAC CTGTTCCACA AGCATTGTTA ATTGCCGATT TAATTGATTA CAGTGTCTGG
TATAAGCCCT ACGGTATGTT GTCACAAGGC TCTAAATGGA GTGATCATTG CACCATCGCT
CGTTTCGCTC AGCAAAACTT ACCGAACGAA CGCCCTGCCT TTATTGTGCA TCGATTAGAT
AGAGCGGCAA CTGGCTTAAT TATTGTTGCT CATAGTAAAA GCGCAGCAAG GGCGTTGTCT
CATATGTTTG AGCATCATCA ACTTGAAAAG CATTACCAAA TTATTGTCCA TGGTGATCAC
CGCAAAAGAG CCCAACCAGA CATTATTGAT AGTGACGTTG ATGGTAAAAA AGCACGAAGT
ACTTTTACTT GTTTGGCCTA TGATGAAATG ACAGACCAAT CATTAATTAA GGTTAAAATT
GATAGCGGCA GAAAGCATCA AATACGACTA CATGCTGCAA GTATTGCAAT GCCCGTAGTT
GGAGATAGAT TACATGGAAT AGCTGATAAA GATGAACAGC GTAATTTGCA ATTGTGCGCA
GTAAGCTTAC GCTTTGTTTG CCCTCTAGCC ACCGAAATTT CGCCCGAAAA TGACAAAGCA
TTAATCGAAC AAAAACGTTT ATTTGAATTG CCAGAAACAT TAAAGCCCCA GTTATGA
|
|---|
| Protein sequence | MPVDNKCSDT QGQNPTQNHE KFEWHIKIDE QVNTTAIALL ENYGYEQNIS LSKAQLKQAI
TKGALWLTPA KNKKQTQRLR RIKKQLVKGD ELHFYFNSEV LSSPVPQALL IADLIDYSVW
YKPYGMLSQG SKWSDHCTIA RFAQQNLPNE RPAFIVHRLD RAATGLIIVA HSKSAARALS
HMFEHHQLEK HYQIIVHGDH RKRAQPDIID SDVDGKKARS TFTCLAYDEM TDQSLIKVKI
DSGRKHQIRL HAASIAMPVV GDRLHGIADK DEQRNLQLCA VSLRFVCPLA TEISPENDKA
LIEQKRLFEL PETLKPQL
|
|---|
| |