| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2774 |
|---|
| Symbol | |
|---|
| ID | 3520088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2894168 |
|---|
| End bp | 2895940 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637285227 |
|---|
| Product | lipid ABC transporter, ATP-binding/permease protein MsbA |
|---|
| Protein accession | YP_269486 |
|---|
| Protein GI | 71279629 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.41147 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAAAAT TAAAACTCAT GACACAAGTC AGTAAAACAA TAGCAAAACC AAGCGGTAAC
GCTAACCTAT ACTCTCGGCT ATTCTCTTAT TATCGAGTAT ATAAAAAACT TATCTTTATT
GCATTAGCTG GTCTATGCCT TTTCAGTTTC GTTGATGCCG GTATGATTTA TTTTGTTAAA
CCACTGATTG ATCAGGGTTT AAGTAAAGCC GATAGCCACA CCCTACAATT AGGCGCTTTA
TTAGTTGTAG CTATATTTTT CTTGCGTGGT ATCGCAAGTT TTACTTCAAG TTATGCTATT
GCGTACATCA GCAGTAAAGT TACTTATCGT ATTCGGCAAC AAGCTTTTGA CAAACTATTG
TATTTACCTC GCACATATTT TGATCTAAAT AGTCGCGGCA GCCTTATTTC AAAAATAATT
TATGATACCG AGCAATTATC ACAATCTTTT TCAAGTGCAG TGGTTATTGC CATCAGAGAG
TCGGTCATCA TTCTGGTATT ATTTTCTATG ATGGTTTACA ACAGTTGGCA ATTAACGGCA
ATATTTTTAG TGATAGTCCC CATTATCGCG CTAATTATTA ATAAGGTTTC GAAACGATTC
AAAAATATTA GCCATAAACT TCAAAACAGT ATGGGACAAG TAAGTAACAA AACAGAGCAA
GCCATTTTGA ATCAACAAGA AATTGTTTTA CTCGATACTA GAACACAGAT AAGCGCACAG
TTTGAAAAAA CAAATAATAA TAATCGCCAA CAAAATATGA AACTTCAGGC GACAAGTGCC
ATTAGTAATC CTGTTATTCA GCTTATTGCT TCTTTCGCTA TTGCTGCTGT GTTATTACTT
GCCAGTATTG ACCAAGTATT AAATCAACTC ACCCCAGGCA GTTTTACCTT AATATTAATT
GCCATGGGCT CACTACTTAA GCCACTAAAA CAACTCAGTA ATATCAATCA ACAATTACAA
AAAGGCTTAA TAGCTGCCAA GAGTTTATTT AGTTTTTTAG ATCAACAAGA AGAACATGAT
ATCGGCACAA AACAATTATC AAAAACGTGC TCAAACATAC GCTTTAACAA TTTTTCTTTC
ACCTATCAGG GGAAAACACA GCCCGCACTC TCTAATTTTT CATTGCAGAT TAAAGGCGGA
ACGAGTGTTG CCTTTGTTGG TGAATCAGGC AGCGGTAAAA GCACTTTAGC CCGCTTATTA
TTGCGTTTAT ATCAATCGCC AAAGCAAAGT ATTTTAATTA ATGATATTGC CATTGAAGAC
TATAGCTTAA GCTCCCTTAG AGCACAGTTT GCCTTTGTTT CACAAGATAT TGTTTTAATA
GATGATACGC TGGCAAACAA TATTAGCTTT GGTTGTAATC GCGATGTAAC AGACTCAGAG
ATTGAACAAG CAGCAATAAA TGCTAATGTG ATGGCTTTTG CTAAAGAGTT GCCCTTAGGC
TTAAATAGCG AAATAGGTGA AAATGGTCGA AATTTATCTG GTGGACAAAG ACAGCGTATA
GCCATTGCTC GTGCTATGTT GCGCGATGCG AGCATTATCG TATTAGATGA AGCGACATCA
GCATTAGATA ATCACAGTGA AAAACATATC CAACAGGCCT TAACGCGCTT AACTCAGCAT
AAAACAGTGC TGATCATTGC CCATAAATTA TCAAGCATTC AACATGTTGA TGAAATTATC
GTCATCAATA AGGGTAGATT GATAGAACAA GGAAATCATA AAACCTTACA GGCTAAAGCA
GGTTATTATC AATCGCTATA TCAAAGTCAA TAA
|
|---|
| Protein sequence | MEKLKLMTQV SKTIAKPSGN ANLYSRLFSY YRVYKKLIFI ALAGLCLFSF VDAGMIYFVK
PLIDQGLSKA DSHTLQLGAL LVVAIFFLRG IASFTSSYAI AYISSKVTYR IRQQAFDKLL
YLPRTYFDLN SRGSLISKII YDTEQLSQSF SSAVVIAIRE SVIILVLFSM MVYNSWQLTA
IFLVIVPIIA LIINKVSKRF KNISHKLQNS MGQVSNKTEQ AILNQQEIVL LDTRTQISAQ
FEKTNNNNRQ QNMKLQATSA ISNPVIQLIA SFAIAAVLLL ASIDQVLNQL TPGSFTLILI
AMGSLLKPLK QLSNINQQLQ KGLIAAKSLF SFLDQQEEHD IGTKQLSKTC SNIRFNNFSF
TYQGKTQPAL SNFSLQIKGG TSVAFVGESG SGKSTLARLL LRLYQSPKQS ILINDIAIED
YSLSSLRAQF AFVSQDIVLI DDTLANNISF GCNRDVTDSE IEQAAINANV MAFAKELPLG
LNSEIGENGR NLSGGQRQRI AIARAMLRDA SIIVLDEATS ALDNHSEKHI QQALTRLTQH
KTVLIIAHKL SSIQHVDEII VINKGRLIEQ GNHKTLQAKA GYYQSLYQSQ
|
|---|
| |