| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2667 |
|---|
| Symbol | |
|---|
| ID | 3523298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2779386 |
|---|
| End bp | 2782493 |
|---|
| Gene Length | 3108 bp |
|---|
| Protein Length | 1035 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637285121 |
|---|
| Product | AcrB/AcrD/AcrF family protein |
|---|
| Protein accession | YP_269381 |
|---|
| Protein GI | 71278940 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTACA CACGAGCTGC ACTGAAAAAC CCTGCAGCAA TTATTGTTAT TGTCGTTTTA
GTTATGGTTT TTGGCCTGTT AAGTGTCGCT AAATTACCTA TTCAATTAAC CCCTGATATA
GAACAGCCTC AAATAACTAT CTTTACCGGT TGGCGAAGTG CAGCACCGTC TGAGTTAGAG
TCGGTGATCA TTGAACCCAT CGAAAATGTA GTAAAAAATA CGCAAGGTGT TATTCGTGTT
GATACCTCGA TAAACCAAGG GTTTGGGCGA ATTAACCTCA CCTTTGATGT CGGCGCTGAT
ATGCAAAAAG CCATGCTCGA TGTCATTAAT AACTTGAACC AAGTTCCGCC TTTACCCATT
GACGCTATTG AGCCAATAGT TTCAGCTAAT GGTGGTGGTA ATACCGCAAC CATGATGATT
AAAACCTTGC CGGATAATCC GGTTGAAGAT TTTGGTCAAT ATCAAAAACT CATTGAAGAT
GTAGTTGAGC CAAGATTCGC ACGAATTCCA GGTATAGGAG AAGTAAACCT TGCTAGCCAT
AGGCAAAGAG AAATTAGAGT CACCTTTGAC CCAGTTAAAA CCGCCTCTTT AGGTTTATCT
ATTGCTGAAA TAAGCTCAGT CATTACCAAT TCAAATGATA CCTCGGCAGG TACCGTTAAT
GTTGGCCGTC GCCAATATGT GGTACGTTTT TCTGGTCAGT ATAGCCTAGA TAACCTCACA
CAAATGATTA TTGGTTATAG TGATGAAAGA CCAATTTATT TGCAAGATAT AGCAACAGTA
GATAACACGT TAGCCGATCG ACAAGGTTTC AACTTACGAA ACGGACAACC GTCATATTAC
CTCACCTTGA GGCGTCAAAA TGGTGAAAAC ATAGTCGCGT TACTTGATAA AATTAACATC
GCGATTAAAG AGCTGAACGA GGGTCCATTA AAAGCAGAAG GATTAACAGT AGACTTAAGT
TTTGACTCTT CCGTACATAT TCGAAATGCG TTATCTCTGG TGCAAAATAA CCTAGGTCTA
GGCGTATTAC TTTCGTTAGT GATCTTATGG TTATTTCTGA GAGGTATGCG GAATATTTTG
ATTATCGCGA TCACCATTCC CGTGTCTTTA TTAGTCGCTT TTGTTGCCTT AAGTCTTTTT
GACCGAACAC TGAATGTTAT TTCCCTTGCA GGTTTAGCTT TTTCTGTTGG TTTAGTGCTT
GATGCCGCCA TCATAGTGCA AGAAAATATT GTCCGACTCA AAAGTAAAGG CATGGATAAT
CATAAAGCGG TGCTCAAGGG GACTACCGAA GTCACCGGCG CTTTATTTGC CTCAACCGCG
ACCAGTGTTG CGATATTTCT GCCGATATTA TTTATGAAGG GTATTGAAGG GCAGCTTTTT
TCAGATTTAG CGCTAACACT CTCTATTGCT GTTATTGCTT CACTACTTTC TGCGATTACC
GTATTGCCTA TTGCCAGCAA ATACTTGTTA AAAGACGTCA GTGATATTGA CCCATTCGCG
CATTATTGGG AACGCCTCAC TGTACTTGTA ATGAAGTTAA CTAACAGTAA GTTCAAACGA
GTAACTTGGA TCAGCCTTTT ACTTGCTGGC TCATTAATCA TTAGTTTTAC CTTATTACCA
AAAACAGATT TCATGCCTAG AGCACCAACC GATGGTTTCT TTTTCAGCCT AGATATGCCG
CCAGGAGGCA ATGTTGACTT TATTGAACAT GAAATGGCGA GTCTGGTTAA AAAACGATTA
GCACCGTACT TAACGGGAGA GAAATCACCA AAAATAAAAA GTTATAATTT TTACTCGTTT
GGCTCTAATG CAACGGGAGG TTTTATCTAT TCTGATGATC CGAGCCGGGT TGAAGAGCTA
ATGAAAGTGG TTAAAGCGGA TGTATTTTCA GGTTTGCCAG ATACCGAAGT ATTCATGTTT
CGTGGCTCTA TGATTAATAT CTCTGGCAAT GGTAATGGCC GTACCATTGA TATAGATATT
CATGGTACCG ATATCGAAGG GTTAATGGAG GTAGCGAAAA CAGGCATTGC AGCGATTAAC
GAAAATATGC CAGACACCAC CGCATTTCCT ATTCCAAGCC TTAACTTAGC TGAGCCAGAA
CTAAATTTAC TACCCAATGA TCAACGTATT ACTCAAGCTG GATTGAATCG TAGTGACGTC
GCTAGAGCTA TTAGTGCTTA CACCAGTGGT TTATTCATTG GCGAGTATTT TGATGGTAAC
CATAGATCTA ATATCATATT GCGTGGCGAG CAGTGGGAAA CCCCTGACGA ACTCGCCATG
ATGCCCATGC ATACTCCGTT AGCTGGCATC CAGACCTTAG GAGAGTTAAC TCATATTACC
AGATCAGCAG GTCCTACTGA GTTAAAAAGA ATCAATGGTA AGCGCACCGT CAGCATTCAA
GTATCACCAC CAGCGACGAT GTCACTTGAA GAAGCAACAG CGCTTATTAA TGAAAAAGTC
ATTCCAAAAA TGCAGTTAGA TCTGCCCGAG AACTCGGCTA TTTCTCTTAG TGGTAATGCT
AATCAGATGG CTTCTGCTAT AAGCGATATG ATCAGCAACT TTATCTTAGC GTTACTTATA
TTATTTTTAC TGATGACAGC ACTTTTCAAG TCAGCCAAAG ATAGTCTAAT GGTATTATTA
GTGATGCCAT TAGCGACTGC GGGTGGTGTT ATCGGACTAA GTATCTTAAA TATTTTCACT
TATCAATCAT TAGATTTATT AACGATGATC GGCTTTATTA TTTTACTTGG CTTGGTTGTT
AATAATGCCA TTTTACTGGT AGATCAAACC AACCAAGGTG GCTTAGAGGG CTTGTCTCGT
TGTGATGCAG TTGCTCAAGC TATTCGTATT CGTGCTCGAC CTGTCTACAT GAGTACATTA
ACCAGTTTAT TCGGCATGTT GCCTTTAATG TTGATGCCAG GTGTTGGCAG CGAAATATAC
CGCGGACTAG CCGCTGTAAT CGTAGGCGGT ATGACGGTCA GTGCTATTTT CACCTTAGTA
TTGTTCCCAA GTTTACTGAG AATGACACAA GGTAAACATG CTTCACCTAC AACCAATATC
GTGTCCATCT CAGCAACAGA ACAAGAATTA CGTATTAGTA ATCGTTAA
|
|---|
| Protein sequence | MNYTRAALKN PAAIIVIVVL VMVFGLLSVA KLPIQLTPDI EQPQITIFTG WRSAAPSELE
SVIIEPIENV VKNTQGVIRV DTSINQGFGR INLTFDVGAD MQKAMLDVIN NLNQVPPLPI
DAIEPIVSAN GGGNTATMMI KTLPDNPVED FGQYQKLIED VVEPRFARIP GIGEVNLASH
RQREIRVTFD PVKTASLGLS IAEISSVITN SNDTSAGTVN VGRRQYVVRF SGQYSLDNLT
QMIIGYSDER PIYLQDIATV DNTLADRQGF NLRNGQPSYY LTLRRQNGEN IVALLDKINI
AIKELNEGPL KAEGLTVDLS FDSSVHIRNA LSLVQNNLGL GVLLSLVILW LFLRGMRNIL
IIAITIPVSL LVAFVALSLF DRTLNVISLA GLAFSVGLVL DAAIIVQENI VRLKSKGMDN
HKAVLKGTTE VTGALFASTA TSVAIFLPIL FMKGIEGQLF SDLALTLSIA VIASLLSAIT
VLPIASKYLL KDVSDIDPFA HYWERLTVLV MKLTNSKFKR VTWISLLLAG SLIISFTLLP
KTDFMPRAPT DGFFFSLDMP PGGNVDFIEH EMASLVKKRL APYLTGEKSP KIKSYNFYSF
GSNATGGFIY SDDPSRVEEL MKVVKADVFS GLPDTEVFMF RGSMINISGN GNGRTIDIDI
HGTDIEGLME VAKTGIAAIN ENMPDTTAFP IPSLNLAEPE LNLLPNDQRI TQAGLNRSDV
ARAISAYTSG LFIGEYFDGN HRSNIILRGE QWETPDELAM MPMHTPLAGI QTLGELTHIT
RSAGPTELKR INGKRTVSIQ VSPPATMSLE EATALINEKV IPKMQLDLPE NSAISLSGNA
NQMASAISDM ISNFILALLI LFLLMTALFK SAKDSLMVLL VMPLATAGGV IGLSILNIFT
YQSLDLLTMI GFIILLGLVV NNAILLVDQT NQGGLEGLSR CDAVAQAIRI RARPVYMSTL
TSLFGMLPLM LMPGVGSEIY RGLAAVIVGG MTVSAIFTLV LFPSLLRMTQ GKHASPTTNI
VSISATEQEL RISNR
|
|---|
| |