| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2197 |
|---|
| Symbol | |
|---|
| ID | 3522110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2292576 |
|---|
| End bp | 2294942 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637284654 |
|---|
| Product | electron transport complex protein RnfC |
|---|
| Protein accession | YP_268922 |
|---|
| Protein GI | 71281638 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
|---|
| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGAAT CAGTAATAGA GCGTATCACG CGTGGAAATT TTTGGGATTT TCATGGTGGT
ATTCATCCCC CTGAACAAAA GTTTCTAACG TCGAATAAGC CAATCAAGCA TCTTGCTTTA
CCAAAACAGT TAATTATTCC ACTGCAACAG CATATCGGCC GAGAAGGTGA TTTACTCGTT
AGCATCGGTG AACATGTACT AAAAGGGCAA GCGCTAACGT TAAGTACTAA TCCTATGGTA
GTGCCAATTC ACGCACCTAC CAGTGGGACA ATCAGTGCAA TCAAAATGTC GGTAATAGCT
CACCCATCTG GCTTAAGTCA ATTGTGCGTA TTTCTTGACG TAGATGGCGA AGACACTTGG
CGTAAAAGAA ACGTTTGTGA AGATTTAGAA CAGCTATCTA ACCATGAAAT AGTTAAAAAA
ATTGCTAATG CTGGTATTGC TGGCATGGGT GGTGCTGGTT TTCCTACCCA TATAAAAGTA
AGCAGCAAGC CCGATATTAA ATTTCTTATC ATTAACGGCG CAGAATGTGA GCCCTACATC
ACCGCTGATG ATTTATTAAT GATGGAACAA AGTAACGCCA TTGTAGACGG CATAAAAATT
CTTGATAGAC TGTTGACCCC TACCGTTATT TTAATTGGCA TAGAAGCCAA CAAACCCAAG
GCTATTAAAG CGCTACAAAA AGCCACCGCT GCTATTGAGA AAATCAAAGT TTGCATCGTG
CCTACAAAGT ACCCTACGGG TGGTGAAAAG CAACTGGTTC AAATTCTAAC AGGTCAAGAG
GTCAAATCAG GTCGACTGCC CATACATGAT GGCATTGTGA TGCAAAACAT TGCTACGTGT
TTTGCTATTA ATGAAGCGGT TAGGCATGAC ACTCCCCTTA TTCGTCGTGT TGTTACGGTA
ACTGGGCAAG CATTAAATAA ACCGCAAAAT GTTTGGGCAT TACTTGGTAC TCCAATTAAT
TTCTTGCTTG AGCAATGTAG TGTTGAAGGT ATTGAGAATC AAAAGCAACC AGTGATCATG
GGCGGTCCTA TGATGGGCTT TAGTGTATCA AGTGAGCTTG TCCCTATTGT TAAAACCAGT
AACTGTATTT TAGTACCCAG CAAAAAAGAA ATGCCGAGTG CTTTTGAAAA GGAAAGTAAC
GAGGTTGAAT GTATTCGTTG TGGTCAATGT AGCGATGTAT GTCCAAGCCA ATTACTTCCG
CAAGAGTTGC AATGGAGCGC AAAAGCTAAA GATTATTCAC AATTAGAGAA ACTTAATTTA
CGTGATTGTA TCGATTGTGG TGCCTGCGCC TATGTTTGTC CAAGTCAAAT TCCTCTGGTG
CATTACTATC GTATTGCTAA AGCTGAAATA CGTGAGCAGC AACAATTAGA CTTAAAAGCA
GAAAAAGCTA AGATTCGTTT TGAAGCACGT AAATTACGCT TAGAAAAAGA AAAAGTAGCT
CGACAAGAAA AACATAAAAA AGCAGCCGCT GCACGTAAAG CAGCTATGAA CAAAGCAACA
CCAGAAGCCA CCGGAGCTAA ATCTGCGGTT GCTGCAGCAC TAGCGCGTGT GAAAGCGAAG
AAAGCCTCAA AAGATCAAAG CCAAGTAAGC ACATCTAACT CACAAAAGGA TTTGCCTGCA
GATTCCGCTG ATGATCAAAA ATCTCAAGTC GCCGCTGCTA TTGCCAGAGC TAAAGCTAAG
AAGAAGCTTA AAGAAGAAGC CACTCAGAAA CAGTCAGGTA GTGATAGTAT TGTAGATAGT
GCAGTAGAAG AAAAGCCTGC TTCAACTGAG CAAGTTGGCA CTGATGATAA AAAATCAAAA
ATAGCTGCCG CTATTGCTAA GGCCAAGGCT AAGAAGCTCA ATAAATCTGC TGATGCTTCT
GACTCAGAAA AAATGACTGA AGATACTTCA CCTGAAAAGA CAGTAAGCAC TGATGATAAA
AAAACAAAAA TAGCTGCCGC CATTGCTAAG GCCAAGGCAA AAAAACTCAG TAAAGCTGCT
GAGGTTACTG ACTTAGAAAA AGATACCAAA AATAGTCCAC CTGAACAGAC AGCAGGTTCG
GATGATAAAA AAGCTAAAAT AGCTGCCGCC ATTGCTAAGG CAAAAAATAA AGCGATAGCA
AAAGCTAACG TAGAGACTAT TATCGAAAAG AAAGTAGAAG TTAACGAAAC AAGCGTTCTT
ACTTCTACGG ACAACTCAAT AAAAACAGAT AGTAAGCCCT CAAAGCCAGA AAAAATTGAA
CAAGAGAATA CTGCTGAAAG TGAAAGTAAA CCTGTTGCCG CAATCGATAA AAAAGCAAAA
ATTGCAGCTG CCATTGCTAA AGCTAAAGCG AAGAAAAAAC TAAAAGAAGC CAGTACAGTT
GAAGAAAATG ACCAAGATGG TGTATAA
|
|---|
| Protein sequence | MVESVIERIT RGNFWDFHGG IHPPEQKFLT SNKPIKHLAL PKQLIIPLQQ HIGREGDLLV
SIGEHVLKGQ ALTLSTNPMV VPIHAPTSGT ISAIKMSVIA HPSGLSQLCV FLDVDGEDTW
RKRNVCEDLE QLSNHEIVKK IANAGIAGMG GAGFPTHIKV SSKPDIKFLI INGAECEPYI
TADDLLMMEQ SNAIVDGIKI LDRLLTPTVI LIGIEANKPK AIKALQKATA AIEKIKVCIV
PTKYPTGGEK QLVQILTGQE VKSGRLPIHD GIVMQNIATC FAINEAVRHD TPLIRRVVTV
TGQALNKPQN VWALLGTPIN FLLEQCSVEG IENQKQPVIM GGPMMGFSVS SELVPIVKTS
NCILVPSKKE MPSAFEKESN EVECIRCGQC SDVCPSQLLP QELQWSAKAK DYSQLEKLNL
RDCIDCGACA YVCPSQIPLV HYYRIAKAEI REQQQLDLKA EKAKIRFEAR KLRLEKEKVA
RQEKHKKAAA ARKAAMNKAT PEATGAKSAV AAALARVKAK KASKDQSQVS TSNSQKDLPA
DSADDQKSQV AAAIARAKAK KKLKEEATQK QSGSDSIVDS AVEEKPASTE QVGTDDKKSK
IAAAIAKAKA KKLNKSADAS DSEKMTEDTS PEKTVSTDDK KTKIAAAIAK AKAKKLSKAA
EVTDLEKDTK NSPPEQTAGS DDKKAKIAAA IAKAKNKAIA KANVETIIEK KVEVNETSVL
TSTDNSIKTD SKPSKPEKIE QENTAESESK PVAAIDKKAK IAAAIAKAKA KKKLKEASTV
EENDQDGV
|
|---|
| |