| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1954 |
|---|
| Symbol | trpB1 |
|---|
| ID | 3518433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2016967 |
|---|
| End bp | 2018169 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637284416 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_268684 |
|---|
| Protein GI | 71278975 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA ATTATTTTAA AAAGTACCCA AACAAAGACG GATTTTTTAA TGAATATGGC
GGTGCATTTA TTCCCCCAAA TTTAGAAGAA GAAATGAAAA AAATTAATGA TGCTTACTTT
GCTATTAGTA AGTCCCATAA ATTTATTTCA GAGCTTCGTG ATATTAGAAA ATATTATCAA
GGTCGTCCGA CTCCTGTTTA TCATTGCCAA CGCTTATCAG AAAAATATGG TGGCCAAATT
TATTTAAAAA GAGAAGATTT AAACCATACT GGTGCTCATA AGTTAAATCA TTGTATGGGT
GAAGCATTGC TCGCTAAACA CTTAGGTAAA AAGAAACTAA TTGCTGAAAC GGGCGCAGGA
CAACATGGTG TTGCCTTGGC TACCGCAGCG GCTTATTTTG GCTTAGAGTG CGAAATACAT
ATGGGCGAAG TTGATATAAA AAAAGAGTAC CCTAATGTAC TGCGCATGAA AGTATTAGGG
GCAACTGTTA TCCCCGTAAC GCATGGTTTG AAAACTTTAA AAGAAGCGGT AGATAGTGCT
TTTGAAGCGT ACCTTAAAGA TCCTATTTCA ACCATTTATT GCATCGGTTC AGTTGTGGGT
CCACATCCAT TTCCAATGAT AGTACGTGAT TTTCAACGTG TTATTGGCAT TGAAGCGCGG
GAACAATTTT TAGATATGAC AGGTGAGTTA CCTGACAGCG TTGTTGCTTG TATTGGTGGT
GGTAGTAATG CAATGGGAAT ATTTTCTTCT TTTTTAGAAG ATGATGAGAC TCAATTGTTT
GGTATTGAAC CTGCAGGGAA ATCTTTTAAA ACGGGAGAAC ATGCCGCCAC TATGACTCTC
GGTAAGCCTG GTCTCATCCA TGGGTTTAAA TGTTATATCT TACAGGATGA AAATGGTGAG
CCAGCACCAG TGCATTCAAT TGCCAGTGGA CTTGATTACC CAGGCGTTGG TCCAGAGCAC
AGTATGTTGA AGGATATGAA TAAAGTGACC TACGACAGTA TTACCGATAA AGAGTGTATT
GATGCATTTT ATGAATTGAG TCGATTAGAA GGAATTATTC CCGCTTTAGA AAGTGCCCAT
GCGGTTGCTT ACGCCATGAA GCTTGCACAG AAATTCCCTG AAAAATCTGT ACTCGTTAAT
CTAAGTGGTC GAGGAGATAA AGATCTCGAT TACGTTGTTG ATACCTTTGG TTTACCTGAA
TAA
|
|---|
| Protein sequence | MKENYFKKYP NKDGFFNEYG GAFIPPNLEE EMKKINDAYF AISKSHKFIS ELRDIRKYYQ
GRPTPVYHCQ RLSEKYGGQI YLKREDLNHT GAHKLNHCMG EALLAKHLGK KKLIAETGAG
QHGVALATAA AYFGLECEIH MGEVDIKKEY PNVLRMKVLG ATVIPVTHGL KTLKEAVDSA
FEAYLKDPIS TIYCIGSVVG PHPFPMIVRD FQRVIGIEAR EQFLDMTGEL PDSVVACIGG
GSNAMGIFSS FLEDDETQLF GIEPAGKSFK TGEHAATMTL GKPGLIHGFK CYILQDENGE
PAPVHSIASG LDYPGVGPEH SMLKDMNKVT YDSITDKECI DAFYELSRLE GIIPALESAH
AVAYAMKLAQ KFPEKSVLVN LSGRGDKDLD YVVDTFGLPE
|
|---|
| |