Gene CPS_1213 details

Gene Information

• Locus tag: CPS_1213
• Symbol: pilV
• ID: 3521977
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 1245807
• End bp: 1246388
• Gene Length: 582 bp
• Protein Length: 193 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637283677
• Product: type IV pilus modification protein PilV
• Protein accession: YP_267956
• Protein GI: 71281505
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4967] Tfp pilus assembly protein PilV
• TIGRFAM ID: [TIGR02523] type IV pilus modification protein PilV; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAGT TATCTTATCA AAGAAAGAAA CAACAACGGG GAATGAGCTT TATTGAAGTC 
CTTGTCGGCT TAGTTATTCT TGTAACTGGC ATTTTAGGGG CCGTCGCTAT GCAAGCAACG 
GCTAAACAAG GTAGTTTTGA TGCGATGCAA CGCTCACTTG CCTCAAGCTT AGCACAAGAT 
ATTATTGCTA GGATGCGAGC TAATGCTCCT TTAATAAACG CAAACTTAAC GTTAAGAGCA 
TATGCTCGCA ATGACTATGA TGACCCCGCT GTTGGGGTTA TTTGTAACAC CGTCAATACC 
GCCGACGGCT GTCTCTCTGC TGCTATGATC GCTAATGATA GATTTGAGTG GGGACGTGCC 
CTGACGGGGC AAGACGTAAT GCAGGGGGCT AGGCCTGTCG GAGGCTTAGT TGGCGCTGCG 
GCATGTATTA TCCAGGATGC TGGTGATGTA AATGAATATA CCGTAATAGT GAGTTGGCAG 
GCTAGAAGTG CAACTTCAGA TAATGCTGCA CAAAATTGTG GTGTGGCAGA CAGTCGAAAC 
AGACGGCAAG TTGTTGTTCA GGCATTTATT TTTAATATTT AA 

 

Protein sequence

MNKLSYQRKK QQRGMSFIEV LVGLVILVTG ILGAVAMQAT AKQGSFDAMQ RSLASSLAQD 
IIARMRANAP LINANLTLRA YARNDYDDPA VGVICNTVNT ADGCLSAAMI ANDRFEWGRA 
LTGQDVMQGA RPVGGLVGAA ACIIQDAGDV NEYTVIVSWQ ARSATSDNAA QNCGVADSRN 
RRQVVVQAFI FNI