Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_1138 |
Symbol | |
ID | 3521539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 1159702 |
End bp | 1161615 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637283602 |
Product | GGDEF/EAL domain-containing protein |
Protein accession | YP_267881 |
Protein GI | 71281070 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAGCGTG ATGCTGCGGC ATTGTTATAT GGCAATGCAG TTTCCGGTAT TGTGATCTCT TTGATTACTT CTAGTTTTCT AGTCTTCATG TTCAGTAACC CATTAACCGA CTCTTTTAAA CACATGTGGT GGTGGGGGAT GAGCATATTG CTTGTGCTCA GAATGGTTGA TGTCATTATC TGGAAAACTA AACTGCAGCA CACTGATTTT GATGGAGAAA AAGCGGTTAA GCGTTATATT ACCGGTGTGA ATCCTACAGC AATTATGTGG GCTATCTACT TAGTTTATAT CACGAAATAC AATAGCTCTG TCGAATTAAC TACAACGCTT ATAGCCATAG CTGCTATGGC TGGTGGTTCA GCTACGATAC TTGCGGCTCA TAAATACACC GCAATGTTTT ATGCATTCAT ACTACTTTCT CCTGCCTCGA TAGGCTTACT CTTATCCGAT CAACATGCAT TACAATTACT GGGTTTTTTG GGAGTTTCCT ACAGTATCGT AATGCTTATT ACTTCAAAGA AATCGGCAGA TTTCACGCGA AATACCTTGT TTTTAAAAAA TGAAAATAAG GTGTTAGTTC ATCAAATGGA AGAAAAAGTT GAGCAGCGAA CGAGAAAAAT TTATGAACTC TCTAATCTTG ATTCACTCAC TGGATTATAT AACCGAACCG CCTTTTTAAA ACATTTAAAG ACTGCGTTAG CTTCATCCAA TAAACCTTTT GCACTGTTAT TTATCGACTT AGACGGCTTT AAAAAAATAA ATGATTCAAT TGGTCATCAA GCTGGGGATC AAATTTTAAA AAAATCTGCT GAGCGTCTTA AACAGTGGTC TTTTGATACC AAGCTATTGT GTCGCTGGGG TGGTGATGAG TTTTTGATGG TACTAGCAGA TACTGATGAA GTCAGCGCTG TTGGTGTATC TAAGCAACTG ATAGAGGTAC TATCTGCCCC TCATAATACT GAACATAGCG TTTTATCTGT CGGTGCAACT ATAGGTATTG CATTATATCC TGAGCACGCA AAAACAGAAG ATCGTCTTAT TCAATCTGCC GATATGGCCA TGTACTATCA GAAAAAACAA GCGCGTTCGA CTGTTGGCGT ATTCTCCAAA CAAATGGATA AACTTTATTC TTATGAACTT CGTCTGAAAA ATGAACTGAC TCAATCGATT GAGAAAGAAC AATTAAGACT CGTTTTTCAA CCGATAATAT CATCTAAAAA TGATGAAGTT GTTGCTTTTG AAGCGCTGCT TCGTTGGCAA CTCGATGAGG AAAATATCCC TCCGGATGAT TTTATTAGTA TTGCTGAGCA ATACGGTTTA ATACACAAAA TCGGTGCGTG GGTACTAAGA AATGCATGTT TGCAAGCCAG CCAATGGAGT TCGGAACAAC CGCTGTCAGT TTGTGTAAAT GTTTCCGTGA TTCAGCTACA AGATGAGAAT TTTATAGCTA TTGTTGATGA TGCACTTTCA AACAGTACAT TGCCTGGCGA TTTGTTGCAT ATAGAAATAA CCGAGTCGGT ATTTGCTGCT GATACTAGTA TCATATCAAA CCAAATAAAA CGACTTCAAG CTCGAAAAAT TAAGGTTTCT ATTGATGATT TTGGTACCGG ATATTCTTCT CTTTCGGTTA TCCAAGACTT AGCGATCAAC ATGGTTAAAA TTGATCGTTC ATTTGTGAAT AAAATGAATA CCAATGGTCA TGCGATTATC TCAGCAGTAA TGCATATCGC CTCATCGTTA GATTTCTTGG TTATTGCTGA AGGTGTGGAG ACTGAAGCGC AAGCACGGGA ATTACAGAAG TTAGGTGTGC ATTTCCTTCA AGGCTATCAT TATTCTAAGC CTATCGAAAT TGAAGATATA GACAGTTATT TAACTAACAT GACACTGGAT AAGCAGTATT TACTTAACAA GTAA
|
Protein sequence | MQRDAAALLY GNAVSGIVIS LITSSFLVFM FSNPLTDSFK HMWWWGMSIL LVLRMVDVII WKTKLQHTDF DGEKAVKRYI TGVNPTAIMW AIYLVYITKY NSSVELTTTL IAIAAMAGGS ATILAAHKYT AMFYAFILLS PASIGLLLSD QHALQLLGFL GVSYSIVMLI TSKKSADFTR NTLFLKNENK VLVHQMEEKV EQRTRKIYEL SNLDSLTGLY NRTAFLKHLK TALASSNKPF ALLFIDLDGF KKINDSIGHQ AGDQILKKSA ERLKQWSFDT KLLCRWGGDE FLMVLADTDE VSAVGVSKQL IEVLSAPHNT EHSVLSVGAT IGIALYPEHA KTEDRLIQSA DMAMYYQKKQ ARSTVGVFSK QMDKLYSYEL RLKNELTQSI EKEQLRLVFQ PIISSKNDEV VAFEALLRWQ LDEENIPPDD FISIAEQYGL IHKIGAWVLR NACLQASQWS SEQPLSVCVN VSVIQLQDEN FIAIVDDALS NSTLPGDLLH IEITESVFAA DTSIISNQIK RLQARKIKVS IDDFGTGYSS LSVIQDLAIN MVKIDRSFVN KMNTNGHAII SAVMHIASSL DFLVIAEGVE TEAQARELQK LGVHFLQGYH YSKPIEIEDI DSYLTNMTLD KQYLLNK
|
| |