| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0288 |
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| Symbol | |
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| ID | 3520218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 296529 |
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| End bp | 299621 |
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| Gene Length | 3093 bp |
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| Protein Length | 1030 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637282753 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_267054 |
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| Protein GI | 71279757 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.866063 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGAAA GTAAACCATC TGTAATGGAC ATATTTGTAA GACGACCGGT CGTTGCGATT
GTCTTATCTA TCATTATTTG TATTGCCGGC ATTTGGTCAG CAAGTAAAAT TCCTGTACTG
CAATTTCCCA AAATAGACAG TGCCTCACTA GTTATTGAAA CCTATTATAT TGGCGCTTCG
GCTGACGTAG TAAAAGGCTT TATAACTGAA CCCATTGAGC GTGCGGCCGC GACTGTGCCT
GGCGTTGAAT ACGTAGATTC AACAAGTACC TCTGGCAGCT CTAAAGTAAC CGCATGGCTC
AAGTTAAATG AGAATTCAAC ACTAGCACTA GCAGAATTAA CAGCAAGATT AGGACAAATT
CGTTTCGAAT TACCACAAGG TGCCCAAGAC CCTGTTGTGT CTGTCAGTCG TGCCGACAGA
CCCTTTGCTG TTTTTTACTT AAATGTGCAA GCCAATGGTA ATGACTTATC ACGTATTACT
GACTATTTAA CTCGCCAAGT AAACCCAGTT TTAAATGCCA TTGAAGGCGT ACAACGTGTA
GGTATTGAAG GTGCGAGAAC ACCAGCAATG CGTGTATGGC TAAATGCTCA GGCACTACAG
ATATTTAACT TAAGCGCTAG TGATGTCTAT CAAGCCTTAG CAACAAACAA CACCATAGCC
ACTATGGGTT ATGTAGAAAA TAGTCGTCAG AAAATTGATA TTGTTGCCAA TACACAACTC
AGCAGTGTTG AAGAGTTTCA ACAACTTGTC ATTAGTGAAG TTGATGGCGC TACTATTCAT
TTAAAAGATG TCGCAAAAAT TGAGCTAGCC GCAGAAGATA CCAGCGTTAC CGCTAGGCTA
AACGATAAAG ATGCTGTTTA TATTTCTATT TGGCCTTTAC CTGGTGCTAA CGAGATAGCC
ATTGGTGATA GGTTATATGA AAAAGTTGAT GAGCTGAACA AAACGCTACC CCACGGCATT
TCAATTGATT ATGCCTATGA CGGCACGCTA TACATGCGCG ATGCATTAAA AGAAATTTTT
ACCACTCTCG CCGAAACGGT TATTTTAGTT GGCTTAGTTG TTGTGCTACT TATGGGTTCA
TTTAGAAGCG CCATAGTGCC TTTAATTACC ATTCCAATTT CTATTTTAGG CGCGATTGCC
GCTATGGGCA TAATGGGTTT TTCATTAAAC CTATTAACCG TATTAGCGAT AGTGTTATCC
GTTGGTTTAG TGGTAGATGA TGCCATTGTG GTGGTCGAAA ACGTGGCACG TTTAATGCGC
CAAGGTTTGT CGAAATTTGA TGCTGCGCTC ATTAGCTCCC GCCAACTTCT TGTGCCTATT
ATTTCAATGA CATTAACTCT GGCAGCGGTT TACGCACCTA TTGGCTTTTT ATCAGGGTTA
ACAGGCGTAT TATTCAAAGA GTTTGCTTTT ACGCTAGCCA TTGCCGTCAT CATTTCAGGT
ATCGTTGCGA TTACGTTGTC ACCCATCATG AGCGCTTATG TGTCCCCCAA AGGTGGTGAG
GAAAGTTGGT TAACCACTAA AGTAAACCAT CTTTTTGAAA GGTTACAACG AAGATATGGA
CAATTGTTAA CCCATATATT TAAGTGGCAG GGGCAAGTAT TTTTAATCGC GCTAGTCGTT
TCCCTGCTCA CCGTACCTTT CTACCTTTAT TCAAAAAAAG AATTGGCGCC AATAGAAGAT
CAAGCCACCG TTATGTTTGT CATTCAATCA CCTCCTGATG CGTCAATGGC ATATAACGTT
GCGCAAATGA ACCCCGTTGT TGAAAGTTTA CAAGAGATTG AAGGGGGTAA GAAAATTTGG
CAAATAATTT TTGGTGGCGG TGGATTTGGC GGTTTAGAGT TAGTTAATGC TGATAAGCGT
GACTATAGTG CACAATCACT GGTACCCCAA ATTTATGGTA AATTATCGCA GATCCCAGGA
CTTAACATGT TTCCTATTTT GCCCTCTTCA TTACCGAGTT CGGGTCAATT TGAAATAGAA
ATGATTGTTA AAGCAACTGC TCCGTATAGC GAAATGAAGC AATATGCGGA TCAACTTGTT
GGTGCTGCCT TTTCCAGTGG TAAATTCCTG TTTGCTGATA CCGATTTGAA AATAGATTTA
CCGCAAGTAG AGTTACAATT AAATCGTGAG AAAATAGCCG ATTTAGGCAT GAATGTCGGC
GAAGTTAGTG AACAATTGGG TATTTTATTG TCGAGCAATT TTGTTAATCG TTTTGATGCT
AATGGTAAAG CTTATCGAGT GATCCCTATT GTTAATGATG AGGTGCGGAG TAAAACAGAA
GCAATTTTAT CATTGGATAT TAAATTGCCT ACTGGTGAGT TATTACCCGT TTCAGCGGTC
GCAGATTTAA AATGGAAAAC CGTACCTAGG CAGCTGGGCA CTTTTGCTCA ACAAGCGTCT
TTTAGAATCT ACGGCGGTGT TGCGCCAGGT TCAAATAAAG AAGCGGCTTT ATCCGCTATT
GAAGATGCAG CTAAAGAAAT ATTACCTTTA GGGTATTCAA TTGATTATGC TGGAGAATCA
AGACAATTAC GCAAAGAAGG TAATACCTTA GTTATGGTAT TGGGTATTTC TTTATTGATT
GTATTTCTGG TATTATCGAT ACAATTTAAT AGCTTTAGAG ACCCGTTAGT CGTATTACTT
GGCTGTGTAC CATTAGCTTT ATCAGGTGCC CTACTCATCC CTTATATTGA ATTAACCACT
ATTAATATTT ACTCGCAAAT AGGGTTAATC ACCTTAATAG GTTTAATTGC TAAGAATGGC
ATATTGATCG TTGAATTTGC TAATCATGCA CAAGAACTTG GCGCTAATAA ACTCGCGGCA
GTCACTGAAG CGGCAACCAC ACGTTTACGT CCTATTTTGA TGACCACAGC AGCCACTATA
TTGGGACATT TCCCGTTAGT ATTAGTGACA GGTGCTGGTG CTGAAGCGCG TAATAGTATT
GGTATTATCT TAGTGGCAGG CATGTTTATC GGCACAATAT TTACCTTATT TATTTTACCT
AGTTTCTATT TATTACTCGC AGAAAAAAGA GATAAGCTTA TGCTTGATGA GATACAAGTC
TCTGACGAAG CCTTGCAGAA AGTACATAGT TAG
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| Protein sequence | MQESKPSVMD IFVRRPVVAI VLSIIICIAG IWSASKIPVL QFPKIDSASL VIETYYIGAS
ADVVKGFITE PIERAAATVP GVEYVDSTST SGSSKVTAWL KLNENSTLAL AELTARLGQI
RFELPQGAQD PVVSVSRADR PFAVFYLNVQ ANGNDLSRIT DYLTRQVNPV LNAIEGVQRV
GIEGARTPAM RVWLNAQALQ IFNLSASDVY QALATNNTIA TMGYVENSRQ KIDIVANTQL
SSVEEFQQLV ISEVDGATIH LKDVAKIELA AEDTSVTARL NDKDAVYISI WPLPGANEIA
IGDRLYEKVD ELNKTLPHGI SIDYAYDGTL YMRDALKEIF TTLAETVILV GLVVVLLMGS
FRSAIVPLIT IPISILGAIA AMGIMGFSLN LLTVLAIVLS VGLVVDDAIV VVENVARLMR
QGLSKFDAAL ISSRQLLVPI ISMTLTLAAV YAPIGFLSGL TGVLFKEFAF TLAIAVIISG
IVAITLSPIM SAYVSPKGGE ESWLTTKVNH LFERLQRRYG QLLTHIFKWQ GQVFLIALVV
SLLTVPFYLY SKKELAPIED QATVMFVIQS PPDASMAYNV AQMNPVVESL QEIEGGKKIW
QIIFGGGGFG GLELVNADKR DYSAQSLVPQ IYGKLSQIPG LNMFPILPSS LPSSGQFEIE
MIVKATAPYS EMKQYADQLV GAAFSSGKFL FADTDLKIDL PQVELQLNRE KIADLGMNVG
EVSEQLGILL SSNFVNRFDA NGKAYRVIPI VNDEVRSKTE AILSLDIKLP TGELLPVSAV
ADLKWKTVPR QLGTFAQQAS FRIYGGVAPG SNKEAALSAI EDAAKEILPL GYSIDYAGES
RQLRKEGNTL VMVLGISLLI VFLVLSIQFN SFRDPLVVLL GCVPLALSGA LLIPYIELTT
INIYSQIGLI TLIGLIAKNG ILIVEFANHA QELGANKLAA VTEAATTRLR PILMTTAATI
LGHFPLVLVT GAGAEARNSI GIILVAGMFI GTIFTLFILP SFYLLLAEKR DKLMLDEIQV
SDEALQKVHS
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