| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0254 |
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| Symbol | thiDE |
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| ID | 3519941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 258003 |
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| End bp | 259592 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637282720 |
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| Product | phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase |
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| Protein accession | YP_267021 |
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| Protein GI | 71279482 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
[COG0352] Thiamine monophosphate synthase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase
[TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACTG AACAACAAGT GGCAATCAAA CCGATAATCT GGACTATTTC GGGCAGTGAT
TGTTCTGGCG GTGCGGGTAT TGCCGCGGAT ATTAAAACGG GGCATGGTTT GGGTGTGGAA
GTATGCCACT TGATTACCGC TAATACTGTG CAGAATTCGC ACCAGCTGCT ATCGGTTAAT
GCCATATCGG TTGAATTATT GCAGCAACAA GCAGCGGTAC TAATGGATGA CAAACCGCCA
TCGGTCATCA AAATTGGTTT AGTGGCTAAC GCAGAGCAAG TACAGTGGTT AGCTCAATTA
ATTGAACAGA TTAAACAAGT TATTCCCACG CTTATTAGTG TTTATGATCC TGTTGGCCAA
GCCAGTGTCG GTGGTAGCTT TAACAACCTT ACTTTGGAAC AGCTAAGCCC TTTATTACTG
AAAATTGATG TGATCACACC TAATTTGATG GAAGCGAAAA GCTTAGCGAA ATTAGATGGG
CTACCTGATA AAAATAGTGC TGAAAAGCTG GCGAATAAAA TCCATCAAAA CTTTGCTATT
AACAGTATTA TTGTTAAAGG TGGGCATATT CACAGTGATG ATAGGTATTC GATTGATTTC
TGTCTTCACC AATTAAATCA GCTGAATGGC AAACAAGACA ATCAAGATAA AGCGCAAACA
GCGATTAGTT ACCAGTTAGG TGCACTGCGC ATAGATAGTC ATTATAGCCA CGGTGGTGGC
TGTAGTTTTG CCAGCGCATT AGCAAGCTTT CTCGCTCAGG GGTACTTGAT ACGCGATGCG
TTTACTTTAG CAAAGGCGTT CATCAGCCAA GGCTTGAGTA CTAGCAAGCA AGTAAGCGAA
TTACACGGTC ATCAATATTA TGGTGCGTTT GAACAGCAAG GCTGGCCGCG TAATGCTGAA
TGCTTTCCCC AAGTTATTGA TGAGCTCAGT CAGCAATATC AAAATTTACC AGCTTTTAAC
TCGTTAGATT TAGCAGAGAA AAAACTAGGC CTTTATCCGG TGATAGATTC ATTATATTGG
CTCAAGCGCT TATTATCTTT AGGTTTAGAG ATTATTCAAT TACGGGTGAA AAACTTGGCT
GAAAGTGAAT TAGAGCAAGT TATTATTACC GCCATTGCTT TGGCTAAAAA ATATGATACT
CGTTTGTTTA TAAATGATTA TTGGCAATTA GCGATTAAAC ATGGTGCTTA TGGCGTTCAT
ATTGGTCAAG AAGACTTGCA AGATGCAGAC TTAACGGCCA TTCAACAATC GGGGATACGT
TTAGGTATCA GTACTCATGG ATGTTATGAA TTCTTATCAG CACAGCGCTT ACAGCCGTCA
TACTTAGCAA TTGGCGCAAT TTTTCCAACG AAAACTAAAG ACATGACTGG GCAAATTCAA
GGCATTGATA ATTTGAGACA GGTATTATCT TTACGCCCTG AAAATAAGCA TAAAATCCCT
GTGGTTGCCA TTGGCGGTAT TAATCTTGAA CGTGCAGCAG AAGTCATCGC TACAGGTGTG
GAAAGTATTG CTGTCGTTAC TGCAATAACA GAAGCTGAGT GCTCACATGG CATTTCACCT
GAGCAGGCAG TCACGCGTTT ACAATTCTAG
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| Protein sequence | MKTEQQVAIK PIIWTISGSD CSGGAGIAAD IKTGHGLGVE VCHLITANTV QNSHQLLSVN
AISVELLQQQ AAVLMDDKPP SVIKIGLVAN AEQVQWLAQL IEQIKQVIPT LISVYDPVGQ
ASVGGSFNNL TLEQLSPLLL KIDVITPNLM EAKSLAKLDG LPDKNSAEKL ANKIHQNFAI
NSIIVKGGHI HSDDRYSIDF CLHQLNQLNG KQDNQDKAQT AISYQLGALR IDSHYSHGGG
CSFASALASF LAQGYLIRDA FTLAKAFISQ GLSTSKQVSE LHGHQYYGAF EQQGWPRNAE
CFPQVIDELS QQYQNLPAFN SLDLAEKKLG LYPVIDSLYW LKRLLSLGLE IIQLRVKNLA
ESELEQVIIT AIALAKKYDT RLFINDYWQL AIKHGAYGVH IGQEDLQDAD LTAIQQSGIR
LGISTHGCYE FLSAQRLQPS YLAIGAIFPT KTKDMTGQIQ GIDNLRQVLS LRPENKHKIP
VVAIGGINLE RAAEVIATGV ESIAVVTAIT EAECSHGISP EQAVTRLQF
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