Gene CPS_0250 details

Gene Information

• Locus tag: CPS_0250
• Symbol: thiC
• ID: 3522568
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 253519
• End bp: 255495
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637282716
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_267017
• Protein GI: 71282096
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAACT CAACCGACGC TGTTAATCCA GCGAAAAAAC CACAAACACG ACGTGAAAAG 
CGCGAAGCGG CAGAAGCATT TTTAAAAAAT GTCTCAGACC AATCTTTTCC AAATTCTAAA 
AAAGTCTACG TGCAAGGTGA AATCCACGAT ATCAAAGTCG GTATGCGTGA AATTACCTTA 
TCTGACACCT TAGTTAGCGG TAGTAAAGAC AAGCCAGTCT ATGAAAAAAA TGAACCATTA 
TGTGTTTATG ATACTTCAGG TTTTTATACC GATGAAAACG TTGAAATAGA CGTTCACAAA 
GGTATTCCTC GTTTACGTGA AACTTGGATT GATGCGCGTG ATGATGTAGA GACTTTTACT 
TCAACTCATT CTGAGTTTGC ACAGCAACGT CTTGATGATG AAGGTGTTGA TGAAATTCGT 
TTTGAACATT TACCTAAAAT GCGCATTGCT AAAAAAGGTA AAAATGTTAC GCAAATGCAT 
TATGCTCGCC AAGGCATTAT TACCCCAGAG ATGGAATATA TTGCCATTCG TGAAAACTTA 
AAACGTGAAG AAGTAAAAGA TGCAACGCTA CTGCTACAAC ACAAAGGTCA ATCCTTTGGT 
GCTAGTATTC CAGAGCAAAT CACGCCTGAA TTTGTCCGTG ACGAAGTAGC TCGTGGTCGC 
GCTATTATTC CAGTAAACAT CAACCATCCA GAATGTGAGC CAATGATCAT TGGTCGTAAC 
TTTTTAATTA AAGTGAATGC TAATATCGGG AACTCAGCGG TTACCTCTTC TATTGAAGAA 
GAAGTTGAAA AGCTCGTTTG GTCAACTAAA TGGGGTGCAG ATACCGTCAT GGATTTATCG 
ACGGGTCGTA ATATTCATGA AACCCGTGAA TGGATCATGC GTAACTCACC AGTCCCTATT 
GGTACTGTCC CTATTTACCA AGCACTTGAA AAAGTAAATG GTGTAGCTGA AGATCTTACC 
TGGGAAATAT TCCGCGATAC TTTAATTGAA CAAGCAGAGC AGGGTGTTGA TTACTTTACC 
ATTCATGCGG GTGTGTTATT GCGGTATGTA CCTATGACGG CAAAACGTGT CACCGGTATT 
GTTTCTCGCG GTGGTTCAAT CATGGCGAAA TGGTGTTTAG CGCATCACAA AGAAAATTTT 
CTTTACACAC ACTTTGAAGA TATCTGTGAA ATTTTAAAGC AGTACGATGT GTCATTTTCA 
TTAGGTGATG GTTTACGTCC GGGTTCAGTG GCAGATGCGA ACGATGAGGC ACAGTTTGCT 
GAATTACATA CGTTAGGTGA GTTAACTAAA ATTGCCTGGA AGCATGATGT GCAAACCATT 
ATTGAAGGCC CTGGTCACGT GCCACTTCAT ATGATTAAAG AAAATATGGA AGAGCAACTT 
GAGCATTGTG GCGAAGCGCC TTTCTATACG CTTGGCCCAT TAACTACCGA TATTGCGCCA 
GGTTATGATC ATATTACTTC TGGCATAGGT GCGGCTAATA TTGGTTGGTA CGGTTGTGCC 
ATGCTTTGTT ATGTAACACC GAAAGAGCAT TTAGGTTTAC CGAATAAAGA AGACGTAAAG 
GAAGGCTTGA TGACCTATAA AATTGCCGCA CATGCAGGCG ATTTAGCTAA AGGTCATCCA 
GGTGCACAAA TTCGTGATAA TGCTATGTCT AAAGCACGCT TTGAGTTCCG TTGGTACGAT 
CAATTCAATA TTGGTTTAGA TCCAGAACGA GCACGCACTT ACCATGATGA AACCTTGCCA 
CAAGAGTCCG GTAAAGTTGC GCATTTCTGT TCTATGTGTG GACCGAAATT TTGCTCAATG 
AAAATCTCAC AAGAAGTACG AGAGTACGCT GCTAATTTAG ATAAAAATGC GATAAAAATT 
CAGCTGCTTG ATGAAACCAT TACCTTAACT TCTGATGAAG CGATTGAACG GGCGATGCAA 
GAAAAATCTG CTGAATTTAA AGCAACCGGT AGCGAAATCT ACCAACTTGC TGAATAG 

 

Protein sequence

MNNSTDAVNP AKKPQTRREK REAAEAFLKN VSDQSFPNSK KVYVQGEIHD IKVGMREITL 
SDTLVSGSKD KPVYEKNEPL CVYDTSGFYT DENVEIDVHK GIPRLRETWI DARDDVETFT 
STHSEFAQQR LDDEGVDEIR FEHLPKMRIA KKGKNVTQMH YARQGIITPE MEYIAIRENL 
KREEVKDATL LLQHKGQSFG ASIPEQITPE FVRDEVARGR AIIPVNINHP ECEPMIIGRN 
FLIKVNANIG NSAVTSSIEE EVEKLVWSTK WGADTVMDLS TGRNIHETRE WIMRNSPVPI 
GTVPIYQALE KVNGVAEDLT WEIFRDTLIE QAEQGVDYFT IHAGVLLRYV PMTAKRVTGI 
VSRGGSIMAK WCLAHHKENF LYTHFEDICE ILKQYDVSFS LGDGLRPGSV ADANDEAQFA 
ELHTLGELTK IAWKHDVQTI IEGPGHVPLH MIKENMEEQL EHCGEAPFYT LGPLTTDIAP 
GYDHITSGIG AANIGWYGCA MLCYVTPKEH LGLPNKEDVK EGLMTYKIAA HAGDLAKGHP 
GAQIRDNAMS KARFEFRWYD QFNIGLDPER ARTYHDETLP QESGKVAHFC SMCGPKFCSM 
KISQEVREYA ANLDKNAIKI QLLDETITLT SDEAIERAMQ EKSAEFKATG SEIYQLAE