Gene CPS_0176 details

Gene Information

• Locus tag: CPS_0176
• Symbol: rho
• ID: 3518976
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 184591
• End bp: 185850
• Gene Length: 1260 bp
• Protein Length: 419 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637282643
• Product: transcription termination factor Rho
• Protein accession: YP_266944
• Protein GI: 71278408
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCTTA CCGAACTGAA AGAAAAATCC ATTAATGAAT TGGTTGACCT TGCTGCGACA 
ATGAAGCTTG AAAACCTTGC TAGAACACGT AAACAAGACA TAATTTTTGC TATTTTAAAA 
GCACATGCGG AAGGCGATAA TGATATTTTC GGCGGCGGTG TTTTAGAGAT TTTACAAGAT 
GGTTTTGGTT TCTTACGCTC GGCAGATTCC TCATACTTAG CTGGCCCTGA TGATATTTAT 
GTATCACCAA GCCAAATTCG TCGTTTTAGT ATGCGAACGG GTGACACCAT CCAAGGTAAA 
ATTCGTTCTC CTAAAAAAGG TGAACGTTAC TTTGCCCTAT TAAAAGTGAC TGAAGTTAAC 
TTTGACCGAC CTGAAAACAC ACGTAATAAG ATTTTATTTG AAAACTTAAC GCCTATTCAT 
CCAACCGATC GTTTTTCATT GGCGCGTGGT AATGGTTCAA CAGAAGATAT TACCGCACGT 
ATTTTAGATT TAGCCTCACC AATTGGTAAA GGGCAACGTG GTTTAATCGT TGCGCCACCA 
AAAGCCGGTA AAACTTTATT ATTACAAAAC ATTGCTCAAA GTATTGCGCA CAATAATCCT 
GACGCAGAGT TAATGGTATT GTTGATCGAT GAACGTCCAG AAGAAGTTAC AGAAATGCAA 
CGCCTTGTAA AAGGTGAAGT TATTGCTTCA ACGTTCGATG AACCAGCAAG TCGTCATGTA 
CAAGTGGCTG AAATGGTAAT CGAAAAAGCA AAACGTTTAG TTGAACACAA AAAAGACGTA 
GTTATTTTAC TTGATTCAAT TACCCGTTTA GCACGTGCTT ATAACACGGT AATCCCATCG 
TCAGGTAAAA TATTGACTGG TGGTGTTGAT GCTAATGCTC TGCATCGTCC AAAGCGTTTC 
TTTGGTGCTG CACGTAACAT TGAAGAAGGT GGTAGTTTAA CTATTATCGC AACAGCACTT 
GTAGAAACTG GTTCTAAAAT GGACGAAGTT ATCTACGAAG AATTTAAAGG TACAGGTAAT 
ATGGAATTAC ACCTGTCTCG TAAAATTTCT GAAAAGCGAG TTTTCCCAGC TATTAACATT 
AATCGTAGTG GTACACGTCG TGAAGAACTT ATTACTAAGC CAGATGAATT ACAAAAAATG 
TGGATCTTAC GTAAAATCGT TCATGAAATG GATGAAATAG GTGCGATTGA ATTCCTAATC 
GACAAACTTG CAATGACCAA AACCAATGAT GAGTTTTTTG ATTCAATGAA GCGTAAATAA 

 

Protein sequence

MNLTELKEKS INELVDLAAT MKLENLARTR KQDIIFAILK AHAEGDNDIF GGGVLEILQD 
GFGFLRSADS SYLAGPDDIY VSPSQIRRFS MRTGDTIQGK IRSPKKGERY FALLKVTEVN 
FDRPENTRNK ILFENLTPIH PTDRFSLARG NGSTEDITAR ILDLASPIGK GQRGLIVAPP 
KAGKTLLLQN IAQSIAHNNP DAELMVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKILTGGVD ANALHRPKRF 
FGAARNIEEG GSLTIIATAL VETGSKMDEV IYEEFKGTGN MELHLSRKIS EKRVFPAINI 
NRSGTRREEL ITKPDELQKM WILRKIVHEM DEIGAIEFLI DKLAMTKTND EFFDSMKRK