| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_0127 |
|---|
| Symbol | |
|---|
| ID | 3518954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 131503 |
|---|
| End bp | 133269 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637282594 |
|---|
| Product | GGDEF/EAL domain-containing protein |
|---|
| Protein accession | YP_266895 |
|---|
| Protein GI | 71278425 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTG GCAATAAGCT TGACTTAAAG GCCATGTTGA AAATTTTTTT AAAAGTCTGT
TTTAACCGCC TCGATTTAAC AAGTGCACAT ATCTATGTCT ATTGTGACCA GTCTGGTATG
CCTAGCAAGT TGCTTCCACT TAAAGGCACG AGTTATCAAT ATTTTTTAAG CATTCCAAAA
AATAAGCGCG GTCAATCATG GTCGAAAAGC TCCATACTTA CAAACTTTGC ACGTCAGCTT
AATAGCAGCC AAAAAACCCT TTCTTTTCAA TGTGAAAATG GACAATATTT ATTTGGCTTT
ATTATTCCAG ACTATGGCTT ACTCACTTTT GAAACTCACT ATGCTATAGC TGATGAAGTG
CAAAAAGCAC TACAGCCAAT TTTACAAAAG CTAGCAACGA GTTGTTACAC CTCGATAGTA
CATGACTCCC TCGTTAAAGA AGTTCTCTCT AGGCAACTTA TTGAAGAAAA GGTTGCCTTC
CAAGCACAGC ACGATGGATT AACCCATTTA TTTAATCGCC AGCATATAAA TCATCTACTG
GGCAATGCTA TAGAAGATGC TCGTATTAAC AACAAAATTG GTAGTGTTCT TTTTATCGAT
CTAAACCGCT TCAAACCAAT AAATGATGCT ATGGGTCATA CTGTCGGCGA TAAAATATTA
CTGACGTTAG CCCATAGGCT ACATTCATTA AGCAGTGAAC ATATAGATAT TGGCCGCTTT
GGCGGGGATC AATTTACTAT TCTATTAAAG AATCTCAAAG ATGATTACCA AGAAACAATT
AACCTACTCA TAGCTCAAAT TAATCAATTA CTTACGGCAC CTTTTGTTAT CGACACTAAT
TCGTACAAAC TCACTTGCAG TATCGGCTAT TCGCTTTTTC CTCTGCAAAG CAGTACCGTC
AATAATCTTA TTAAATTTGC CGATATTGCT ATGTACGAAG CCAAACGAGC CAAAACTCAG
CAAGGTAAGC AATATCAAAG AGTCATGTCT GAAAAAATAA AAAGACGCTT AGCTTATGTT
GATGATATGA AGCAAGGGTT AGAACAAGGC GATTTTAAAT TATACTATCA GGCGCAATAT
AACCATCATG GTGACATTAT TGGCGCTGAA GCATTATTGC GCTGGCAACA CCCTGTTCAT
GGTAAGGAGT CGCCTGCGGT CTATATCCCT ATCGCAGAAG AAAGCGATCT CATTCTCGCT
ATTGGTCAAT GGGTCTTAGA GCAAGCCTGT CGTGACATCA AAAAACTAGA ACAATTATCA
CTACCAGAAA GTTTTAATAA AATAGCGATT AATATCAGCG CTAAGCAATT AATTCAGCAT
GATTTTCAAG AAATTGTCCT GAACGCTGTG AAGCAGAATG ATATCCCTGC TAAACGGTTA
GCGTTAGAGT TAACCGAAAA TCTTCTGGTA GAAAATATTG AAGATTCAAT CAAGTTAATT
GCCTCATTAA AAGAAAACGC TATTGATTGC GCTATTGATG ATTTTGGTAC GGGTTATTCT
TCTCTAACCT ACTTAAAACG CATTCCTGCG AGCGTATTAA AAATAGATCG TTCTTTTGTG
ACTAACATAG CGCAAAGTAG TGAGAGTGCA GCCATTGCCA GCATGATAAT CAGTTTAGGA
AAAACCCTGA ATATGGACAT ACTGGCAGAA GGTGTTGAAA CACAGGAAGA ATTAAACTGT
TTGAAAGAAC TTGGTTGTTT CCATTACCAA GGTTTCTATT TTAGTGGTCC CCTTCCCTTT
GATGAGTTTG CTAAACTATT AAACTAA
|
|---|
| Protein sequence | MAIGNKLDLK AMLKIFLKVC FNRLDLTSAH IYVYCDQSGM PSKLLPLKGT SYQYFLSIPK
NKRGQSWSKS SILTNFARQL NSSQKTLSFQ CENGQYLFGF IIPDYGLLTF ETHYAIADEV
QKALQPILQK LATSCYTSIV HDSLVKEVLS RQLIEEKVAF QAQHDGLTHL FNRQHINHLL
GNAIEDARIN NKIGSVLFID LNRFKPINDA MGHTVGDKIL LTLAHRLHSL SSEHIDIGRF
GGDQFTILLK NLKDDYQETI NLLIAQINQL LTAPFVIDTN SYKLTCSIGY SLFPLQSSTV
NNLIKFADIA MYEAKRAKTQ QGKQYQRVMS EKIKRRLAYV DDMKQGLEQG DFKLYYQAQY
NHHGDIIGAE ALLRWQHPVH GKESPAVYIP IAEESDLILA IGQWVLEQAC RDIKKLEQLS
LPESFNKIAI NISAKQLIQH DFQEIVLNAV KQNDIPAKRL ALELTENLLV ENIEDSIKLI
ASLKENAIDC AIDDFGTGYS SLTYLKRIPA SVLKIDRSFV TNIAQSSESA AIASMIISLG
KTLNMDILAE GVETQEELNC LKELGCFHYQ GFYFSGPLPF DEFAKLLN
|
|---|
| |