| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_2066 |
|---|
| Symbol | |
|---|
| ID | 4205340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens SM101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008262 |
|---|
| Strand | - |
|---|
| Start bp | 2287287 |
|---|
| End bp | 2289044 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642566616 |
|---|
| Product | helicase domain-containing protein |
|---|
| Protein accession | YP_699375 |
|---|
| Protein GI | 110802850 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA ATGCGGCTCA AAGGGAGTAT AAAAAATTAT CAGGTCAAAT AAATCAAATA
GAAAACATAG TAAGACATTC AAAAGCAGGA GCACTTTTTG AACATGAATC AACCTTAAGA
AAAAAAATAT TGCAATTAAA AGAGATGAAA GATCAAGGGT TAAAAGGATA TGAATCTCTT
TATGATAGAT ATGAAGAATT ATTAGAAGAG GTAGGAAAGA GAATTCTAGA AAATTATAAT
AAGAAAAATG ACACTAATTT TGATTTTTAT GAAGTATTAA GAAACAATTA CAATGTATTT
CTTAATTCAG GAATTATGAC TCTTCTTGTA AAACATCATA TTCCAGAGCT AATATCTAAG
GAATTTGATG AGAAGTTTCC AGCAAATCCA AAGGATGAAT ATCTTCATAC AAGAAGACTT
AAAAGAAAAT TCTATCTTCA CTTAGGAGAA ACCAATACTG GAAAAACCTA TACTGCTATG
CAAAGACTTA AAGAGGTTAG AAAAGGTGTA TATTTATCTC CTCTTAGAAT TTTAGCCTTA
GAAAACTTTG AAAGATTAAA TAATGAGGGT ATTAAATGTA ATCTTCTTAC TGGAGAAGAA
GAAATATTAT TTGAAGATGC AACACATGTA TCATGTACCA TAGAAAAAGC TAATATACAT
GAAAAATATG ATGTGGCAGT TATAGATGAA ATTCAAATGA TAGATGATTC ACAAAGAGGG
TATGCTTGGA CTAGAGCTTT ACTTGGTTTA TATTGTACTG AAATACATAT ATGTGGAGCC
TTTAATGCTA AGAATATATT AAAAGAAATT ATAGAAGATT GTGGAGATGA CTATGAGATT
ATAGAATATC ATAGAGATAT TCCACTTATT GTAGAAGATG AAAGTTTTCA TCCAAAAAAT
GTTAAAGAGG GAGATGCCTT AGTTTTATTT TCAAAGAAAA AAGTTCTTCA AATGGCTGAG
CAATATTCAC AGATGGGAAT TAAATGCTCC ATAATCTATG GAGATTTACC ACCAGAGGTT
AGAAAAAAAC AGTATGAAGA ATTTATAACG GGAAAAAATA AAATTTTAAT AACAACTGAT
GCCATTGGAA TGGGAGTTAA TCTTCCTATA AAGAGAATTA TTTTCTTATC AATAAGCAAA
TTTGATGGAG AGCAAATGAG AGAGTTAACT TCTCAGGAGG TTAAACAAAT TGCAGGAAGA
GCAGGAAGAA AAGGCATATA TGATACGGGA TATGTAGCTA CTTATAGAGA TAATAAGGAA
TTTATTGAAG AGAGATTAGA GGAAGAGGAT ATTAGTATAA AAAGAGCAGT TTTAGGACCT
TCAGATGCAA TATTAGAAAT TGATAATCTT CCTTTAAATG AAAAATTAGC TTTATGGAGC
ACAAAGAAAT GTGAAGTTCC ATACTATAGA AAAATGGATA TAAGTGAATA TTTAATAATA
TTAGAAAGAT TAAAATCATA TAAACTTCTT GAAGAAATTC AATGGGAGCT TTTAAAAATT
CCTTTTGATA TATCTAAAGA TGACTTAATG AATCAATTTT TAAATTTTGT TGATCAGCTA
TTTATAAATG ATCAAGAAGA ACTATTTAAA CCTCAATGTT ATTCAGGAAC TTTATATGAC
TTAGAAACTT ATTATCAAAT GGTAAATATG TATTATTCTT TTAGCAAGAG ATTTAATTTA
AATTTTGATT TAGAGTGGAT TGAAAATGAA AGGCTTACTG TGAGTGAAGA AATAAACAAT
ATTCTTATGA GAATTTAA
|
|---|
| Protein sequence | MKKNAAQREY KKLSGQINQI ENIVRHSKAG ALFEHESTLR KKILQLKEMK DQGLKGYESL
YDRYEELLEE VGKRILENYN KKNDTNFDFY EVLRNNYNVF LNSGIMTLLV KHHIPELISK
EFDEKFPANP KDEYLHTRRL KRKFYLHLGE TNTGKTYTAM QRLKEVRKGV YLSPLRILAL
ENFERLNNEG IKCNLLTGEE EILFEDATHV SCTIEKANIH EKYDVAVIDE IQMIDDSQRG
YAWTRALLGL YCTEIHICGA FNAKNILKEI IEDCGDDYEI IEYHRDIPLI VEDESFHPKN
VKEGDALVLF SKKKVLQMAE QYSQMGIKCS IIYGDLPPEV RKKQYEEFIT GKNKILITTD
AIGMGVNLPI KRIIFLSISK FDGEQMRELT SQEVKQIAGR AGRKGIYDTG YVATYRDNKE
FIEERLEEED ISIKRAVLGP SDAILEIDNL PLNEKLALWS TKKCEVPYYR KMDISEYLII
LERLKSYKLL EEIQWELLKI PFDISKDDLM NQFLNFVDQL FINDQEELFK PQCYSGTLYD
LETYYQMVNM YYSFSKRFNL NFDLEWIENE RLTVSEEINN ILMRI
|
|---|
| |