Gene CPR_1979 details

Gene Information

• Locus tag: CPR_1979
• Symbol: glr2000
• ID: 4205945
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 2186702
• End bp: 2187385
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 642566529
• Product: transporter
• Protein accession: YP_699288
• Protein GI: 110803966
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTTAA TAAAACTAAG ATCTGTAGTA AGAACGTATG GAAAGGGCGA AAATATTGTA 
CATGCATTAA GAAATATAAA TTTATCTATA AAATCTGGAG AGTTTGTAGC TATAATGGGA 
CCTTCAGGTT CGGGAAAAAC AACATTATTA AATATATTAG GGTGTTTAGA TTCCGCTGAC 
TCTGGTTCTT ATGAGCTAGA AGGTAGAGAA ATTACTGATA CAAGTGAGAA GGAACTTGCT 
AAAATTAGAA ATGCTAATTT AGGATTTGTA GTTCAGTCAT TTGAGTTATT AAATGATTAT 
ACAGTATATG AAAATATAAA AATCCCATTA GAATATAGTG ATAAAAAGAT TAAGAATAAG 
AAAGAAAAGG TAATGGGAAT ATTAAAAGAG TTAGATTTAT TAGATAAATT TAATAAATAT 
CCTACTGAAC TTTCAGGAGG ACAATGTCAA AGAATTGCAA TAGCTAGAGC TTTGATAAAT 
GAGCCTAAAA TTATTCTAGC AGATGAACCA ACAGGGGCTC TTGATAAAAG AACAAGTAAC 
GAGGTTATGA ATATTTTTAA GGATATAAAT AAAGGAGGAA CTACTATAAT TTTAGTAACT 
CACGATATAA ACATAGCATC TCAATGCCAT AGAATAATAA ATATTGAGGA TGGTTTGATA 
GTTAATGATA TAAAAAATAG TTAA 

 

Protein sequence

MDLIKLRSVV RTYGKGENIV HALRNINLSI KSGEFVAIMG PSGSGKTTLL NILGCLDSAD 
SGSYELEGRE ITDTSEKELA KIRNANLGFV VQSFELLNDY TVYENIKIPL EYSDKKIKNK 
KEKVMGILKE LDLLDKFNKY PTELSGGQCQ RIAIARALIN EPKIILADEP TGALDKRTSN 
EVMNIFKDIN KGGTTIILVT HDINIASQCH RIINIEDGLI VNDIKNS