| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_1818 |
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| Symbol | |
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| ID | 4206105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 2009805 |
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| End bp | 2010725 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 642566368 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_699133 |
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| Protein GI | 110803816 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.05074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAA GTAAAGAAGT AATAAAAATA ACTGAAGAAG AAAAAGGAAT AAGAGCAGAT
AAATTTTTAG CTCTTAAAAT AGATGGAGTT TCAAGAAACT TTATTCAAGG GCTTTTTGAT
GATGGAAAAA TTTTAATTAA TGGAAAAGCA GAAAAGGGAA AATATAAGCT TTCAGTTGGA
GATTGCGTTG AGGTAGAAAT ACCAGAACCA GAGGAATTAA AAGTTGAAGC TGAGGATATC
CCATTAAATA TAATTTATGA AGATGAAGAT GTAATAGTCG TTAATAAACC AAAGGGAATG
GTAGTTCATC CTGCACCGGG AAATTATACT GGAACTTTAG TTAATGCATT ATTATACCAT
TGTGATGATT TATCTGGAAT AAACGGGGTT ATAAGACCTG GAATAGTACA CAGAATAGAT
AAAGATACTT CTGGAATATT AGTTGTTGCA AAAAATGATA ATGCTCATCA AAAACTAGCA
GAACAATTTA AAGATCATAG CATAAAAAGA GAATACTATG CTATTGTTGA GGGAAGATTT
AAAAAAGAAG GTGGCACAAT TGATGCACCT TTAGGAAGAC ATCATAGAGA TAGATTAAAG
TATGCTGTGG TTAAAGATGG AAAGAGAGCA GTTACTCATT ATGAAGTTCT TAAAGTATTT
AATTCATGTT CCCTTGTTAA ATGTACTTTA GAAACAGGAA GAACACATCA GATAAGAGTT
CATATGGCCT TTATAGGGCA TCCATTACTT GGAGATACTG TTTATGGCTT AAAGAAACAA
AAGAAATTAA GTCAAGAGGG GCAAGTTCTT CATGCTAAAA CATTAGGATT TATTCATCCT
ACTACTGGAA AATATGTTGA ATTTGACTCA GAATTGCCAG AGTACTTTGA AAAAATTGTA
GAGAAATTAG GAGGGTGTTA G
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| Protein sequence | MSLSKEVIKI TEEEKGIRAD KFLALKIDGV SRNFIQGLFD DGKILINGKA EKGKYKLSVG
DCVEVEIPEP EELKVEAEDI PLNIIYEDED VIVVNKPKGM VVHPAPGNYT GTLVNALLYH
CDDLSGINGV IRPGIVHRID KDTSGILVVA KNDNAHQKLA EQFKDHSIKR EYYAIVEGRF
KKEGGTIDAP LGRHHRDRLK YAVVKDGKRA VTHYEVLKVF NSCSLVKCTL ETGRTHQIRV
HMAFIGHPLL GDTVYGLKKQ KKLSQEGQVL HAKTLGFIHP TTGKYVEFDS ELPEYFEKIV
EKLGGC
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