Gene CPR_1787 details

Gene Information

• Locus tag: CPR_1787
• Symbol: dxs
• ID: 4205334
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 1986054
• End bp: 1987913
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 30%
• IMG OID: 642566337
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_699102
• Protein GI: 110802844
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGAAA TTCTACAGAA AATAACTGAT CCTAAAGAAA TAAAGGATTT AGATGAGAAA 
GAATTAGAAA TGTTAGCTAA AGAGCTAAGA GAATTTTTAA TAGAAAGCGT TTCAAATACT 
GGTGGACATT TTGCTTCAAA CTTAGGTGTT ATAGATCTAA CAGTAGCTTT ATTTAAAAAT 
TTTGATTTTA GTGAAAATAG AATAATATGG GATGTAGGAC ATCAATCTTA TGCTTATAAG 
ATATTAACTG GAAGAAAAGA TAAATTTAAT ACTTTAAGAC AATATGGTGG ATTGTGTGGT 
TTTCCTAAGA GGACAGAAAG CGAATATGAT TTTTTTGCCA CTGGACATAG TAGTACATCA 
TTATCTTCAG CAGCAGGTAT GGCTAGAGCT CAGAAGATTC TTGGAAAAGA TAATAAGGTC 
ATAGCAGTTA TAGGTGATGG AGCCTTAACT GGAGGTATGG CTTTAGAAGC CTTAAACGAT 
ATTGGATATA GAAAAGATAA TCTTATAATA ATATTAAATG ATAATCAAAT GTCTATATGT 
AAAAATGTTG GAGGACTTGC AACCTATTTA AATAAGCTTA GAATGGGTGT AGGTTATAAT 
AAATTAAAAT CAGATATTGG ATCAACTTTA GATACAACTT CTTTGGGCAA AAGAGTAAAG 
AACTCTCTTT CAAAATTAAA AGATGGTATC AAAAAGATTG TTGTACCAAG TATGTACTTT 
GAGGATATTG GATTAAAATA TTTTGGCATA GTAGATGGAC ATAACATTAG AGAATTAAAT 
GAAGTTTTAA GTATAGCTAA AAGTATAAAA GGACCAGTTA TAATACATAC AGTTACTAAA 
AAAGGAAAAG GATATGAATT AGCAGAAAAA AATCCTAATA AATATCATGG AGTATCTCCT 
TTTGATTTAG GAGAAGGAGT GATTTCAAAG TTTGCAAATA GAAATTATTC TTCTACCTTT 
GGAGAAGAAA TGATTAAATT AGCTAAAAAT GATGACAAAG TTGTTGCAAT TACAGCTGCT 
ATGCCAGATG GAACAGGATT AAAAGACTTT AGAGAAGAAT TTCCTGATAG ATTTTTTGAT 
GTAGGTATAG CGGAACAACA TGCTGTTACA TTAGCTGCTG GAATGGCGGC AGAAGGTTTA 
AAACCATTTT TTGCAGTCTA TTCTACTTTC TTACAAAGAG CTTATGACCA AGTTTTACAT 
GATGTATGCA TACAAAATCT ACCTGTTACA CTTTGTCTAG ATAGAGCTGG CTTAGTTGGA 
GAAGATGGAG AAACTCATCA AGGTATATTC GATATTTCAT TTTTATCTCC AATGCCTAAT 
ATGACTATTG TTGCACCTAA GTGTATAGAT GAAATGGAAG TTATCTTAAA ATGGGCAAGT 
AATTTTAATG CACCTTTAGC TATAAGATAT CCAAGAGGTG GAGATATTGA TGTTAATTTA 
AAACCATTAA GTAAAATAGA ATATGGAAAA TGGGAAAAGG TTCAAGAGGG AGAGAAGATA 
GCAATAGTTG CTACTGGTAA AATGGTTCAA CATGCTATGA TTGCTGCACA AAAGATAAAA 
GAAGAAAAAA ATATAGATAT TTTAATTATA AATGCAACCT TTATAAAACC AATAGATAAA 
GAATTATTAA ATTCCTTGTC AAAGGATGGA TTTAAGATTG TAACTATTGA AGATAATATT 
AAAAAAGGTG GCTTTGGAGA AGGCGTTCTA GAGTATTTAA ATGAAATTGG ACATGAAGAA 
AAAATTGTTA CATTAGCATT TAATGATAAG TTTATAGAAC ATGGTAAGCC TGATATTTTA 
TATAGAATTA ATGGATTAGA TGCAGAGGGA ATAAAAAACA CATTAATTGA ATTACTTTAA 

 

Protein sequence

MSEILQKITD PKEIKDLDEK ELEMLAKELR EFLIESVSNT GGHFASNLGV IDLTVALFKN 
FDFSENRIIW DVGHQSYAYK ILTGRKDKFN TLRQYGGLCG FPKRTESEYD FFATGHSSTS 
LSSAAGMARA QKILGKDNKV IAVIGDGALT GGMALEALND IGYRKDNLII ILNDNQMSIC 
KNVGGLATYL NKLRMGVGYN KLKSDIGSTL DTTSLGKRVK NSLSKLKDGI KKIVVPSMYF 
EDIGLKYFGI VDGHNIRELN EVLSIAKSIK GPVIIHTVTK KGKGYELAEK NPNKYHGVSP 
FDLGEGVISK FANRNYSSTF GEEMIKLAKN DDKVVAITAA MPDGTGLKDF REEFPDRFFD 
VGIAEQHAVT LAAGMAAEGL KPFFAVYSTF LQRAYDQVLH DVCIQNLPVT LCLDRAGLVG 
EDGETHQGIF DISFLSPMPN MTIVAPKCID EMEVILKWAS NFNAPLAIRY PRGGDIDVNL 
KPLSKIEYGK WEKVQEGEKI AIVATGKMVQ HAMIAAQKIK EEKNIDILII NATFIKPIDK 
ELLNSLSKDG FKIVTIEDNI KKGGFGEGVL EYLNEIGHEE KIVTLAFNDK FIEHGKPDIL 
YRINGLDAEG IKNTLIELL