Gene CPR_1226 details

Gene Information

• Locus tag: CPR_1226
• ID: 4204301
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens SM101
• Kingdom: Bacteria
• Replicon accession: NC_008262
• Strand: -
• Start bp: 1377730
• End bp: 1379724
• Gene Length: 1995 bp
• Protein Length: 664 aa
• Translation table: 11
• GC content: 26%
• IMG OID: 642565782
• Product: ATP-dependent DNA helicase PcrA, putative
• Protein accession: YP_698548
• Protein GI: 110802519
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.305357
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTAATT TAGATAAATA TCAAAATGAA GCTGTAAGAG CAAGGAGTAA AAGTGTTCTT 
GTTATAGCTC CACCAGGAGC AGGAAAGACC ACAGTAATAT TAAATAGAAT TAAATATCTT 
TTAGAAGAAA GAAAGGTTAA AGGAATACAT GTTATAGTAA TAACTTTTAC TAAGGCGGCA 
GCAGAAAATA TGAAAAGTAG ATTTAAAGAA ATGCATAAGG AAGGTGTTGT TCCATTCTTT 
GGAACCTTTC ATGGACTTTT TTATAAAATT TTACTTAGAA ATAAGGATGA AATAAGGCTT 
ATAGAGTCTA AGGATTCTTA TAATATTATA AGGAAAGTAT TATCCTCTTA TATAGAAGAG 
GTAAGTGATG AAAAAATAAA AGAAGTATTA AATAATATAT CTAGAAAGAA AGTTTCTTCT 
AAGGATTTAG AAATATCAAT GACTTATGAT ATTTTTGATA AATGCTATGA AGCATATGAA 
ACTTTTAAAA ATGAGAGAGG ACTTTTAGAT TTTGATGATT TACAAATAAA AGCAGTAACT 
CTTTTAAAAG AAAATCCTCA TATATTAGGA TATTATAGAA ATTTAATAAA ATATATATTA 
GTTGATGAGT TTCAAGATTG TGATGAAGTT CAATTAGAAT TTTTAAGACT TATAAATAAT 
GAAGTTTTTT GTGTTGGAGA TGAGGACCAA AGTATATATT CCTTTAGAGG AGCAACTCCT 
AAATGTATGA TAAACTTTGA GGAGAACTTT GAAGGTAGTG AGAAGGTTTA TTTAAAATAT 
AATTATAGAA GCTTAAAAAA TATTGTGGAG GTATCTAAGG ATGTTATAAA GCATAATAAA 
GAGAGATACC AAAAAGAAAT AATAGCTTTT AATGAAAATC AAGGGAAAAT AGAACTTAAA 
AAGCCCTTTA ATGAGTCTGA GGAAGCAAAT ATAATTGCTT TAAAAATAGA AGAAAGCAAA 
AGATTAGGGA ATAAATATTC TGATACTGCT ATTTTGTATA GAACAAATAT GGAGAGTAGA 
AGTTTTATTG ATGCCTTTAT TAGAAAAAAG ATTCCCTTTA AGCTTTTAGA TAAAGAGTAT 
AATTTCTTTA ATCATTTTAT ATGTAGAGAT TTAATTGCAT ATTTAAGACT CTCAATAGAT 
TCATTTAATA AAGAAGATTT TAGTAAAATA ATAAACAAAC CCTTTAGATA TGTTTCAAAA 
AGTGCTATTT ATGGAGTGAT GAATTCTAAG AAGAAAGAAA ATGTTTTTGA TATATTAATG 
AATGTGGAAG GCGTACATCC ATTTCAAATG AGAAAGTTTG AGGAGCTAAA AAGTGACATA 
GCTTATTTAA ATAAAATTTC CTTAAATAGT GCTATTGATT TTATATTAAG TGATTTAGAG 
TATAGTCAGT ATATACGAGA GTATTCCTCT AAATTTAAGC AAAATCAAGA GGATTTATTA 
GATATTGTAG AAGAATTTAA AAGTTCAGCT ATGGAATTTA AATCTATAAT CACTTTTCTT 
TCTCACATAG AAAGTGTTGA AGAAAATTTA GAAAACTTAA ATTCTAAAGG CAATATAGAC 
TCTGTTATAT TAAGCACCAT GCATGGGGTA AAGGGAATGC AGTTTAATGA TGTTCATATT 
GTAAATATAG TAGATGAAAC AATACCACAT AAAAATAGTA TGGAAAATTT AGAAGAGGAG 
AGAAGACTTT TTTATGTGGG TATAACTAGA GCCATAAATA ATTTATATCT TTATGCACCT 
AAAAGTGTAA GAGGTAAATT TAAGGATCCA TCTATATTTT TAAATAATAC AAATCTAGAT 
AGCCAATGTA ATATAACAGA TTATGGATTA AAGGAAGGAG ATGCCATAAG ACATAATTAT 
TTTGGCATAG GTGAAATTTT AAAAATAGAG AAGGATACTA TTTCAATTAA ATTTATTCAA 
GGAGAAAATA AAAAATTTTC TTTGAGAACT TTGATTGAAA ATAATTTAAT TGAAAAAATA 
ATTTGTGAGG TTTAA 

 

Protein sequence

MSNLDKYQNE AVRARSKSVL VIAPPGAGKT TVILNRIKYL LEERKVKGIH VIVITFTKAA 
AENMKSRFKE MHKEGVVPFF GTFHGLFYKI LLRNKDEIRL IESKDSYNII RKVLSSYIEE 
VSDEKIKEVL NNISRKKVSS KDLEISMTYD IFDKCYEAYE TFKNERGLLD FDDLQIKAVT 
LLKENPHILG YYRNLIKYIL VDEFQDCDEV QLEFLRLINN EVFCVGDEDQ SIYSFRGATP 
KCMINFEENF EGSEKVYLKY NYRSLKNIVE VSKDVIKHNK ERYQKEIIAF NENQGKIELK 
KPFNESEEAN IIALKIEESK RLGNKYSDTA ILYRTNMESR SFIDAFIRKK IPFKLLDKEY 
NFFNHFICRD LIAYLRLSID SFNKEDFSKI INKPFRYVSK SAIYGVMNSK KKENVFDILM 
NVEGVHPFQM RKFEELKSDI AYLNKISLNS AIDFILSDLE YSQYIREYSS KFKQNQEDLL 
DIVEEFKSSA MEFKSIITFL SHIESVEENL ENLNSKGNID SVILSTMHGV KGMQFNDVHI 
VNIVDETIPH KNSMENLEEE RRLFYVGITR AINNLYLYAP KSVRGKFKDP SIFLNNTNLD 
SQCNITDYGL KEGDAIRHNY FGIGEILKIE KDTISIKFIQ GENKKFSLRT LIENNLIEKI 
ICEV