Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0748 |
Symbol | |
ID | 4204490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 875617 |
End bp | 876981 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 642565308 |
Product | sodium:glactoside symporter family protein |
Protein accession | YP_698074 |
Protein GI | 110803170 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2211] Na+/melibiose symporter and related transporters |
TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.329176 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGATACAT TAATAAATAA AAAAGTAGAA AAAAAAGAAG ATGTTTCTAT AAAAACTTTA ATTACTTATA GTATGGGAAG TTTAGGAAAT AATATGATAT ACGCATTGAT TAGTTCCTAC CTTTTAATCT TTTTAACAGA TAGTTTTAAA GTAGGGGCAG CTGCCATAGG AACCTTATTT TTGGTGGCAA GAATTATAGA TGCAATAACA GACCCTATAA TGGGGGTTAT AGTTGATAAT ACTAATACTA AAATCGGAAA GAGTAGACCC TATTTATTTA TCGTTCCTAT TTTCATGGGA ATAGCAACAA TTATGTGTTT TTCAGCACCA GATTTAAGTT ATAGTGGTAA AATAATATGG ATATACATAG CATATATTTT CTGGGGAATA TCCTTTACTG CAATGGATAT ACCATATTGG TCATTATCTG CCAATATTAC AAGATCTTCA TCAGGAAAAA CTAAGATTGT TACATCAGCA AGAACAGTGG CCTATGTAGG TAATTTTATA ATTTTAACTT CAACAATTCC GCTTGTAGCA ATAATTGGAA ACTGGCAAAC TGTGGCCATA ATATATGTTT GCTTTGCTAC TATATTTACT TGGGTTACAG CCTTTGGAAT TAGAGAAATT AAGGATAATG TGGCAAAGAA AAAGGAAAAG CAAGGGTTTA AACAATTTAT AAATCTATTA AAGACAAATC AGCCTTTAAG AATAGTTTTA TTATCAATGT TAGTTTTAGA ATTAAGTGGA GCAATAAAAA ATACAATATC TATATATTAT GTAAAGTATA ATTTTAATGC AGAAATGATG ATTCCAGTAG TTAGTTCAGT TGGTATGGGA GCTAGTATAC TAGGTGGAAT AATGTCACCA TTTTTAACAA AAAAATTAGG AAAAAGAAAT ACTGCTCTTT TAGGATTATT AGCTGGTGCA GCTGGATCAT TTTTAGTATT TTTATTATCC TATTCTTCAT TACCTTTAAT GATAGTTATA AACTTCATAA GTGGAATTTT TGATGGAGCA GGTTATATTA CCTTAACATC AATGGTTGCA GATTGTGTTG AGTATGGTGA ATGGAAAACT GGAAAGAGAT CAGAAGGAAT GATATTCTCT TTAAATATAT TTAAAAGTAA GATTGCCAGT GCTATTGGGG GATCCTTATG TGGATATATC TTAGCGTATA TTGGTTATAC AGCAAATGAA AGTCAATCTA CTTTTACATT AAACGGAATT CATTTAATAC AGACTTTAGT TCCATGTGCC ATTGTAATAA TAAGCTTTAT GCTACTAAGA AGATATAATT TATCTGAGGC AGAATATGAA GCTATAGTTG ATGACTTGAA AAATGGTGTT ACAAGAATAG GTTAA
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Protein sequence | MDTLINKKVE KKEDVSIKTL ITYSMGSLGN NMIYALISSY LLIFLTDSFK VGAAAIGTLF LVARIIDAIT DPIMGVIVDN TNTKIGKSRP YLFIVPIFMG IATIMCFSAP DLSYSGKIIW IYIAYIFWGI SFTAMDIPYW SLSANITRSS SGKTKIVTSA RTVAYVGNFI ILTSTIPLVA IIGNWQTVAI IYVCFATIFT WVTAFGIREI KDNVAKKKEK QGFKQFINLL KTNQPLRIVL LSMLVLELSG AIKNTISIYY VKYNFNAEMM IPVVSSVGMG ASILGGIMSP FLTKKLGKRN TALLGLLAGA AGSFLVFLLS YSSLPLMIVI NFISGIFDGA GYITLTSMVA DCVEYGEWKT GKRSEGMIFS LNIFKSKIAS AIGGSLCGYI LAYIGYTANE SQSTFTLNGI HLIQTLVPCA IVIISFMLLR RYNLSEAEYE AIVDDLKNGV TRIG
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