Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPR_0513 |
Symbol | speD |
ID | 4204017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens SM101 |
Kingdom | Bacteria |
Replicon accession | NC_008262 |
Strand | + |
Start bp | 608318 |
End bp | 609133 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 642565070 |
Product | S-adenosylmethionine decarboxylase |
Protein accession | YP_697841 |
Protein GI | 110801512 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1586] S-adenosylmethionine decarboxylase |
TIGRFAM ID | [TIGR03331] S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGGGT TGAAAGAAAA GATATGCCTT TATGGTTTTA ATAATCTTAC TAAGACACTA AGTTTTAATA TTTATGATAT TTGTTATGCG AAAACAGAGA GAGAAAAGGA AGACTATATA AAATATATAG ACGAGCAGTA TAATTCTGAA CGTCTTACAA AGATTCTTTG TGATGTTACA GAAATGATAG GAGCTCATGT CCTAAATATT TCAAAACAAG ATTATGAACC TCAGGGAGCT AGTGTAAATG TTCTTATAAC AGAGGAGGCA TTACCAGTAG CACTAATTGA CCCATCATGT AATAAAGGAG AACTTTCATA TTTGGAACTT AGAGATAGTG TAGTTGGACA TTTAGATAAA AGTCATCTTA CAGTTCACAC TTATCCAGAA TTTCATCCAA ATAACGATAT AATTTCTTTT AGAGTTGATA TAGATGTATC TACTTGTGGA AAAATATCTC CATTAAATGC TCTAGATTAC TTAATCGGAA GTTTTGATTC AGATGTAATA ACTATTGATT ATAGAGTTAG AGGATTTACT AGAGATGTTG ATGGTAGAAA ATGCTACATA GACCATGATA TAAAATCTAT TCAAGATTAT ATAGATGAAG AAACCCTAAA AAAATACGAT GCTATGGATG TTAATGTTTA TCAATCTAAT ATATTCCATA CAAAGATGAT GCTTAAGGAT ATCGGGTTAA ATAACTATTT ATTTAATTCT GATCCATATG AATTATCTCC AAATGATAGA AGAGAAATAA GAGATAGAAT ATCAAAAGAG ATGATTGAAA TATACGGTGG TGTAAATATT TATTAA
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Protein sequence | MLGLKEKICL YGFNNLTKTL SFNIYDICYA KTEREKEDYI KYIDEQYNSE RLTKILCDVT EMIGAHVLNI SKQDYEPQGA SVNVLITEEA LPVALIDPSC NKGELSYLEL RDSVVGHLDK SHLTVHTYPE FHPNNDIISF RVDIDVSTCG KISPLNALDY LIGSFDSDVI TIDYRVRGFT RDVDGRKCYI DHDIKSIQDY IDEETLKKYD AMDVNVYQSN IFHTKMMLKD IGLNNYLFNS DPYELSPNDR REIRDRISKE MIEIYGGVNI Y
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