| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPR_0235 |
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| Symbol | |
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| ID | 4204021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens SM101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008262 |
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| Strand | - |
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| Start bp | 287587 |
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| End bp | 289914 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 25% |
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| IMG OID | 642564792 |
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| Product | GGDEF/EAL domain-containing protein |
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| Protein accession | YP_697569 |
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| Protein GI | 110801516 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0547392 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCATG GACCTATGCT CAATAAGATA AAACTTTTTT TTATAGTTCA AATTATATTA
AGTTTTTTAG TTTTGGCAGG AACATTAATT TCTATATTGG TAATACCATC ACACTTGCCA
GACTACTTTA TATGGGCCAT AGCCTTTTCA TTTTGGGTTT TTCAATGTGG CTTTAGTACA
ATCTTTGCAT TTAGATATAG ATTTTCTAAA AGTTCTCTAA GCACCGTAAA ACTAAGCTTT
ATACTAATTG GAAGCATACA AATTTTAATA ACCTTAGCAA CAAACCTATT TAGTATATTT
GATCTTCCAA TTTTCAATAC ATTAATAATA AAAAACTTTC AACTTTTATT ATTATCATTA
ATATTTATTG TGATGATTTA TAAACTTATA AAAGATATGC TTAAATATAG GGTTTTAAAG
GATTATATTA TTCGTGATTC GTTTTTTACC TTTATACCTT TTGCTTTTAT TATTTATAAG
AACTCTAAAT ACTTTATATC TTCACTATAT TTCTTAGATG ATTCAGTATA TAGTTTAGCT
CTATTAAACA TAAATAGCTT AAGAATTTTT TTAGAAGGAT TTCTTATTAT ATTGATCTTT
GTAAAAACTA TTTATTTAAG AGGAAATAAA AAAAGTAGCT TTCTATTATT AATCTACTTT
TATATATCAA ATCTTAACTG CTATATAGTC TCATATTTTA ATAGTAAGTT GCTTTTTTAT
CATTACTTAT ATCAAGGTAT TGGAATCTAC TTTATATGTC CAATATTATT AATACTTTCC
ACATATTATT CAATTACAGA ACAAGAAAAA ACTCCAGATA AAGTAGAATT TGATGGTTCT
TATATGAATA TAAATAACTC ATGGATAAGT ATTACAATAG GTATTTTTCC AGTATCATTT
TCAGCCATAG ATATAATTGC ATCCTCTCTA GCAAGTGGTG ATTTTAACGG CATAGAAAGC
TTAGTAATTA TACTTCTTGT TATGATTTTA CTAGTATGTA GAGATATTAT ATTAAGAAAA
GATAATCTAA GATTAATTGC AAGTGTTAAG AGGGCTAATG AAATAGACTT TTTAACTAAT
ATGTATAGTA GAAATTATTT TTTAAAGAAA CTTGAAGCCA TGAATACTGA TTATGCACTT
TTCTTTATAG ACATAAAGAG CTTTAAGGAC ATTAATAATA TTTTTGGACA TGTTGTTGGT
GATAAGGTAT TAGTAGAAGT TGCAAATAAA TTTAAAGAAC TTAAACTACT TCTAGGTAAA
AGTGTTTTCT ACTGTAGATA TAGCGGAAAT GAATTTGCCT TAATCTCTAA ATTAGAGCAA
GTTGATCTTA TATTAAAATT TTTTAGAGAC CTTGAAAATA TAAAAATTCA ACATAACTCT
GATTTAATAC ATATAAACTT TAATATTGGA TATTCATTAA ATGATTCAAA TATTAACTTA
GACTTACTAA TTCAGGAAAC AGATTATGCT CTAATGAGAG CTAAGAAGCT TAAAGGTCCT
AATAACTCTA TACTTATGTA TGATGATAAT TTAAAAACGG ACTTAAAACA CATAAATATA
TTAAAAAAGG ACTTTATAAA TGATCTTTTA GCAGATAAGT TTCATTTAGT TTTCCAACCA
AAAGTTTGCG TAAAAACATT AAAAATAGTA GGTTTTGAAA CTCTACTTCG TTGGAAACAT
GATAAACTAG GTGAAATTTC TCCTTGTAAG TTTGTACCTA TAGCTGAAAA TTTAGGTGAA
ATTTCTTCCC TTGACTTGTA TGTTTTTAAA AAATCCTGTG AGTTTCAAAG ATGCTTAATA
GATATGGGAA TAGAAATAAA GTGCAGTGTA AATTTATCAT TAAACACTTT AAAATCCTAT
GAAAAAATAA ATGAGATTCT AAATATTTAT AAAAAATATA AAATTCCAAA ACATTTAATA
ACGGCAGAAA TATTAGAAAA TGTATCACTA AATAATAATG CTAAAACAAT CTCTTATATT
AATCTTCTTA GAGAAAATGG AATTTGTATA TCCATAGATG ATTTTGGTAC AGGCTATTCT
TCTCTTAGCC AAATATCTAA TCTGTATTTT GATGAATTAA AAATCCCAAG AGAGTTTGTA
ATAAATGCAA GAACCTCTAG TAAATTAGCT GTTATTGAAG CAATATCCAT ATTAGCAAAA
AAATTAAATG TAACCTCAGT TATTGAAGGG GTAGAAACTT ATGAAGATTT CAAATTATTT
AGTAGTTTAG GATTTGATAT TGTTCAAGGA TACTATTTCT CTAAACCCCT AACTAAATCT
GAAATAATAG ATTATATAAA AGTTAATATT AATAACAAAA TAAGCTAG
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| Protein sequence | MKHGPMLNKI KLFFIVQIIL SFLVLAGTLI SILVIPSHLP DYFIWAIAFS FWVFQCGFST
IFAFRYRFSK SSLSTVKLSF ILIGSIQILI TLATNLFSIF DLPIFNTLII KNFQLLLLSL
IFIVMIYKLI KDMLKYRVLK DYIIRDSFFT FIPFAFIIYK NSKYFISSLY FLDDSVYSLA
LLNINSLRIF LEGFLIILIF VKTIYLRGNK KSSFLLLIYF YISNLNCYIV SYFNSKLLFY
HYLYQGIGIY FICPILLILS TYYSITEQEK TPDKVEFDGS YMNINNSWIS ITIGIFPVSF
SAIDIIASSL ASGDFNGIES LVIILLVMIL LVCRDIILRK DNLRLIASVK RANEIDFLTN
MYSRNYFLKK LEAMNTDYAL FFIDIKSFKD INNIFGHVVG DKVLVEVANK FKELKLLLGK
SVFYCRYSGN EFALISKLEQ VDLILKFFRD LENIKIQHNS DLIHINFNIG YSLNDSNINL
DLLIQETDYA LMRAKKLKGP NNSILMYDDN LKTDLKHINI LKKDFINDLL ADKFHLVFQP
KVCVKTLKIV GFETLLRWKH DKLGEISPCK FVPIAENLGE ISSLDLYVFK KSCEFQRCLI
DMGIEIKCSV NLSLNTLKSY EKINEILNIY KKYKIPKHLI TAEILENVSL NNNAKTISYI
NLLRENGICI SIDDFGTGYS SLSQISNLYF DELKIPREFV INARTSSKLA VIEAISILAK
KLNVTSVIEG VETYEDFKLF SSLGFDIVQG YYFSKPLTKS EIIDYIKVNI NNKIS
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