Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2100 |
Symbol | dapF |
ID | 4201532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2331566 |
End bp | 2332384 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 638082965 |
Product | diaminopimelate epimerase |
Protein accession | YP_696529 |
Protein GI | 110799448 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.312969 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGTTTT CAAAAATGCA TGGAAATGGA AATGATTTTA TAGTTATAGA AGATTTAAAC AATGAGTATT TAGGTAAAGA GGGAGAAATT GCTCAAAAAA TGTGCCATAG AAGATTTGGA ATTGGCGCAG ATGGGATTTT AATAGTTAGA AAGAATGAAA ATTGTGATAT AGAAATGGTA ATAATAAATT CAGATGGATC TTATGCTGCT ATGTGCGGAA ATGGAATAAG ATGTTTTGCT AAGTATGTCT ACGAGAAGGG AATAGTAAAG AAAGATGTGC TAGATGTTTT AACAGGTGAT GGAGTTAAAA GAATCTTTTT AGAAATTGAG AATGATAAGG TAAAAAGTAT CAATGTAAAT ATGGGATTTG GAGACTTTAA ACCAAAGAAT ATTCCAGCAT TATGTGATGA AGAAATAATA GAAAAAAAAG TAAGTGTAGG AAATGGAAAT TTTGAAATAA CATCTTTACT TATGGGTGTT CCTCATACTA TTATATTTGA GGAGGAAAAA TATCCTATAG AATGTGGTAG GGATATAGAA AAGTATGAAT TATTTCCTCA AGGAACAAAT GTTAACTTCT GCAAAGTAAT TGATAGAAAT ACAATGGAAG TTAGAACTTG GGAAAGAGGT GCAGGCCCAA CCTTAGCATG TGGAACAGGA AATTGTGCTT CAGTTATAGC TGCTAATAAA TTAGGTCTTG TAGATAAAGA AGTAAAGGTA ATAGTTCCTG GTGGAGAATT AAAAGTTAAT ATTGAAGATG ATGGAGTAAA AATGATAGGT AATGCGTCAT TTATTTGTGA TGGCACATAT TTATTTTAG
|
Protein sequence | MKFSKMHGNG NDFIVIEDLN NEYLGKEGEI AQKMCHRRFG IGADGILIVR KNENCDIEMV IINSDGSYAA MCGNGIRCFA KYVYEKGIVK KDVLDVLTGD GVKRIFLEIE NDKVKSINVN MGFGDFKPKN IPALCDEEII EKKVSVGNGN FEITSLLMGV PHTIIFEEEK YPIECGRDIE KYELFPQGTN VNFCKVIDRN TMEVRTWERG AGPTLACGTG NCASVIAANK LGLVDKEVKV IVPGGELKVN IEDDGVKMIG NASFICDGTY LF
|
| |