Gene CPF_1817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_1817 
Symbolcax 
ID4202694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand- 
Start bp2049445 
End bp2050440 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content29% 
IMG OID638082687 
Productcalcium/proton exchanger 
Protein accessionYP_696251 
Protein GI110798646 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0530] Ca2+/Na+ antiporter 
TIGRFAM ID[TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein
[TIGR00378] calcium/proton exchanger (cax) 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.378438 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTACA TATTTCTAAT AATAGGGTTC CTTTTACTTA TTAAAGGAGC AGATCTTTTT 
GTTGATGGGG CTTCAGGAAT AGCTAAAAAG CTAGGAGTTC CAGCTGTTAT AATTGGACTT 
ACTATTGTAT CCTTAGGAAC TAGTGCACCA GAGCTTGCAG TAAGTATATC AGCTTCACTA 
AAAGGTAGCA ATGATATTAC CATGGGAAAT GTTTTAGGAT CAAATTTATT TAATCTTTTA 
GCAGCTTTAG GATGTACAGC CATTGTGGCT CCTTTAGTCA TAAAGAAGCA CATAATAAAA 
AATGATTTTA TAGTAAATTT AATTGCAACT TTTATTTTAT ATGTTTTTAC TTTTACTGGA 
CTAATAGGAA GTAAAAATTC TTTATCTAGA ATAGATGGAG CAGTATTAGT CTTAATGTGC 
ATAACATATA TAATATATTT AATATATACA GTTAATAGAA GCAATAAAAA AGAAGATGAA 
GTAGCAGTAA CTACAGAATT TGAAGATTTT GAAGAGCAAA ACATAAAGTC ACCTAATAGC 
ACAGTTAAAA ATATAATTTT ATCAATAGTT GGAGTTATAG GAATAATATT AGGTGGAAAA 
ATAGTTGTTG ATTCAGCTTC TGCAATTGCC TTAGGATTAG GACTGAGTGA AAAATTAGTT 
GGTCTTACAA TTGTGGCAAT AGGTACTTCT CTTCCAGAAC TTGTTACTTC TTTAGTGGCA 
GCTAAAAAGG GTGAAAATGA CATAGCTCTT GGAAATATAT TAGGATCTAA TACCTTTAAC 
ATATTATTAA TATTAGGTTT ATCATCCGTA ATAAGCCCTA TAACAATAGC TGCAAGTTTA 
TCAATAGATT TAATATTCCT TATAATTGTC ACTTTAATAA TAGGTGCTTT AATTTTCTTA 
AATAAGAAAA AAGAAAAAGT ACTTACTAAA TATGAAGGGG TATTTCTTTT AGCTCTTTAT 
ATTGGATATA CAGTATATAT AATAATGAGA AATTAA
 
Protein sequence
MNYIFLIIGF LLLIKGADLF VDGASGIAKK LGVPAVIIGL TIVSLGTSAP ELAVSISASL 
KGSNDITMGN VLGSNLFNLL AALGCTAIVA PLVIKKHIIK NDFIVNLIAT FILYVFTFTG 
LIGSKNSLSR IDGAVLVLMC ITYIIYLIYT VNRSNKKEDE VAVTTEFEDF EEQNIKSPNS 
TVKNIILSIV GVIGIILGGK IVVDSASAIA LGLGLSEKLV GLTIVAIGTS LPELVTSLVA 
AKKGENDIAL GNILGSNTFN ILLILGLSSV ISPITIAASL SIDLIFLIIV TLIIGALIFL 
NKKKEKVLTK YEGVFLLALY IGYTVYIIMR N