Gene CPF_1698 details

Gene Information

• Locus tag: CPF_1698
• ID: 4201545
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1919946
• End bp: 1922006
• Gene Length: 2061 bp
• Protein Length: 686 aa
• Translation table: 11
• GC content: 27%
• IMG OID: 638082572
• Product: AraC family transcriptional regulator
• Protein accession: YP_696136
• Protein GI: 110800462
• COG category: [K] Transcription
• COG ID: [COG2207] AraC-type DNA-binding domain-containing proteins

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000348751
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGAAAAG AATATGTTAA TTTCCCTTCA GACATACCTG TAACCATATC TTATGTAAAC 
ATAAAAAACT ACCCCTTGCA TTGGCATGAT GCAATAGAAA TACTTTATGT TCTTAAGGGC 
AGCATAAAAG TAGATATAGA TACTGACAGT TATGAAATAC AAGAAGATGA AATTGAAATA 
GTAAACACAG AACAAACTCA TAGAATTTAT TCTAATAAGG ATAACAGAGT TTTAATATTT 
AAAATAGATC CACACTTTTT CGAAAAATAT TATAGCGATA TAGAAAATAT GTTTTTCTAT 
ACTAACACCT CTGATGAAGG TGCTCAAAGT GATGAATCTT ACGATAAACT TAGAGTATTT 
TTATCCATTA TATTATGTGA AGAAGCTCAA AAAGTAGATG ATTATGATAA ATATATAGAA 
AAATCCCTAG TAGAGCTTTT ATTTCACCTT TTAAATAATT TCCACTATCT TTTATATGAT 
AATGATGAAA TTCATGAGAA TAATATGTTA CTAGAAAGGT ACCATAGAAT TTCTAAGTAT 
ATATATAATA ACTACAATAA GAATATAACC TTAAAGGATA TTGCTAATAC TGAGTTTCTT 
AGTACTCATT ATCTTTCCCA TGAAATAAAA TATGCAACAG GACTAAGTTT TACAGACCTT 
CTAAACTTAA CTAGAGTTGA AGAATCAGTA AAACTTCTTT TAGATACTGA TAAGTCCTTA 
TCTGAAATAT CTTATGAAAT AGGCTTTTCT CATACTCGTT ATTTTAATAA ACATTTTAAG 
GCCTATTACA ATTGCACTCC TCTTCAATTT AGAAAAAAAC ATAAAATAAG TGAAGAGGAA 
TATAATAAAC AAAAAGAAAT AACTTACTAT CCCTTAGCTG ATAGTCTTGA GGAACTATCT 
TATTACTTAG ATGATTATCC AAGATTTAAT TATGAAGATA AGATTCATAA GCTTACTTTT 
AATATGAATA CTGAAGGCAC TGAATTTAAT AAATACTTTA AAGAAGTTCT TAATGTAGGA 
GATGCCTTTG ACTTATTATT AGAAGATAAC CAAGATATTG TTGAAGATCT TCAAGATCAT 
ATAGGGTATA ACTATATAAG ACTTCTACAT GTATTTTCAT CAGATATGGG CATATTCCCT 
GGTTCAAAAT TCTTTAACTG GACTAGAACC TTTGATATTT TTGAATATAT ATCTTCATTA 
GATTTAATCC CTTTAATAGT CCTAGATGAT TCTGGATATT CTAAGGATAA TTTCTTAGAT 
GTTATAAAAT CCTTTATAGA CTTTTTTAGC GAGGTAGAAA GTTTTGAATT AACAGATTTA 
AAATTCCAAT TTACCTCTAC ATTTAATGAG GATCTAAAGA ATTCTTTAAT TGAATTGTTT 
GAATCTAAGG ATTTAAATTT AGTAAATGAA CTTTATACTC CAAACAATAA AATAGATTTA 
ATATATGACA CAGCTTATAT GCTTCCATTT ATAATTCATA ATACTGTAAG CTCAGGAAGC 
AAATTAAACT TTATAAAAGC CTTTGATGCC TTAGATAGAC AAATTGACAT TACAAATGAA 
GTTTTCTTTG GCTATCCAGC AATGGTAAAT GATAAAGGAA TTAAAAAACC CTCTTATTAT 
GCTTACTATT TTTTAAGCAA ACTAGGAGAC ACACTTCTTT ATAAGGGAGA TGGATATATA 
CTAACTAAGT CAGAGGATGA ATATCAACTT CTTGTATATA CCTATAATGA TGAAATTGAT 
TCCCTTATAG ATTTTAAAAA CTTTACTAAG TTAAGAGGGG TTAAAGACTT GGTAGATAAA 
AAACTTTCCT TAAACTTACT TGATTTAGAT AGCGATGTTA GAATAACTAA ATACACCATA 
GGGGAGAACT TTGGCTCTTC ATTTAATTAC TGGCTTTCCA TGGGAAAACC TAAAAGATTA 
AGAAAAGCAG AAAAGGATAT ATTATTCCAA GCTTCCTATC CTAAAATAGA ATTTAAGTAC 
GCCAAAAAAA ATACTATTTT AAATATACAA ACAACTCTTC AAGGATATTG TGCAGAACTA 
TTTATACTAA AAAAAGTTTA A 

 

Protein sequence

MRKEYVNFPS DIPVTISYVN IKNYPLHWHD AIEILYVLKG SIKVDIDTDS YEIQEDEIEI 
VNTEQTHRIY SNKDNRVLIF KIDPHFFEKY YSDIENMFFY TNTSDEGAQS DESYDKLRVF 
LSIILCEEAQ KVDDYDKYIE KSLVELLFHL LNNFHYLLYD NDEIHENNML LERYHRISKY 
IYNNYNKNIT LKDIANTEFL STHYLSHEIK YATGLSFTDL LNLTRVEESV KLLLDTDKSL 
SEISYEIGFS HTRYFNKHFK AYYNCTPLQF RKKHKISEEE YNKQKEITYY PLADSLEELS 
YYLDDYPRFN YEDKIHKLTF NMNTEGTEFN KYFKEVLNVG DAFDLLLEDN QDIVEDLQDH 
IGYNYIRLLH VFSSDMGIFP GSKFFNWTRT FDIFEYISSL DLIPLIVLDD SGYSKDNFLD 
VIKSFIDFFS EVESFELTDL KFQFTSTFNE DLKNSLIELF ESKDLNLVNE LYTPNNKIDL 
IYDTAYMLPF IIHNTVSSGS KLNFIKAFDA LDRQIDITNE VFFGYPAMVN DKGIKKPSYY 
AYYFLSKLGD TLLYKGDGYI LTKSEDEYQL LVYTYNDEID SLIDFKNFTK LRGVKDLVDK 
KLSLNLLDLD SDVRITKYTI GENFGSSFNY WLSMGKPKRL RKAEKDILFQ ASYPKIEFKY 
AKKNTILNIQ TTLQGYCAEL FILKKV