Gene CPF_1588 details

Gene Information

• Locus tag: CPF_1588
• ID: 4201600
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: -
• Start bp: 1806506
• End bp: 1807018
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 27%
• IMG OID: 638082466
• Product: putative phage terminase, small subunit
• Protein accession: YP_696031
• Protein GI: 110801293
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3747] Phage terminase, small subunit
• TIGRFAM ID: [TIGR01558] phage terminase, small subunit, putative, P27 family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0296354
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAGGTT TGGGAAGAAA GATGATTTCA GTTTCTCAAA TTATTGCAAA TGGTAATAAG 
AGCCATTTGA CTAATGAAGA AATTGAAAAA AGACAAGAAC AAGAAGAAAA ATTAAAAAAA 
TTACCTAGAG ATAAAATAAG ACCACCAACA TGGTTATCCA AAGATGGTAA AAGTATTTTT 
AAGAAAATTG TTAAAGAGTT AGAAGCTGTA GATATACTTG CTAATATTGA TAATTATAAT 
TTAGCTGTTT TGGCTAACTC TATAGAAAAA TATATAGAAT GTACCATGAA GTTAAATTGT 
GATGAGCTTA CAGTAACACA TATTAATAAA CAAGGATCTT TAACAACTCA AAAGAATCCT 
TTGATTTCTA TTCAAATTCA ATATGCTGAT GTTATTAAAA AGTTAGGTGC AGAGTTTGGA 
TTAAGTCCAG CAGCAAGATT AAAAATTATT CAAGAAGCAT CTGATATTGA TGATGATGAA 
AAAGCATTTA ATAAGGATTT TGGAAATGTA TAA 

 

Protein sequence

MLGLGRKMIS VSQIIANGNK SHLTNEEIEK RQEQEEKLKK LPRDKIRPPT WLSKDGKSIF 
KKIVKELEAV DILANIDNYN LAVLANSIEK YIECTMKLNC DELTVTHINK QGSLTTQKNP 
LISIQIQYAD VIKKLGAEFG LSPAARLKII QEASDIDDDE KAFNKDFGNV