Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_0855 |
Symbol | deaD |
ID | 4203385 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 1014223 |
End bp | 1015659 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 638081738 |
Product | ATP-dependent RNA helicase DeaD |
Protein accession | YP_695305 |
Protein GI | 110799701 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.521199 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTA ATGAATTAAA TTTAAGTGAT GATATTATTA AAGCGCTTAA TAATTTAGGA TATAAAAATC CATCAGAGGT TCAGGAAGCT TCTATTCCAA AATTATTAAA GGGTGAAGAT ATAATAGTTA AATCTCAAAC TGGTAGTGGT AAAACTGCAA GTTTTGGAAT ACCTGTTTGT GAAAAGATAA ATATTGAAGA AAAAAAGGTT CAGTGTCTAG TTTTAACACC AACTAGAGAG TTAGCAATTC AAGTTAAAGA TGAACTTTCT AATATAGGAA GAATAAAAAA GGTTAGATGT GCGGCTATAT TTGGGAAACA ACCTTTTAAT GAGCAAATTA GAGAGCTTAA ACAAAGAGTA CATATAGTAG TAGGAACTCC AGGAAGAGTA TTTGATCATA TGGAAAGAGG AACTTTAGAC TTAAGTGAAG TTAACTATGT AGTTATAGAT GAAGCTGATA AAATGCTTTC AATGGGATTT ATTGATCAAA TAAAGGACAT ATTAGGAGAA TTAAGATTAA ATAAAACCAC TGCATTATTT TCTGCTACAT TTTCTAAGGA AATAGAGGAA ATATGTGAAG AGTATATGAG AAATCCTATG CTTTTAGAGG TTAAATCAAA AGTATTCAAT AGAGATAGAA TAGAAGAAAG TGCAATTGAA ATAGAGGAGA AAAATAAGGG TAAAGCTTTA TGGAAATGCC TTTATTCTTA TCATCCAGAG AGTGCTATAG TATTTTGTAA TACAAGAAAT AAGGTTAAGT CTGTTTACAA AATGCTTAAG GATGAGGGAA TAACTTGTAA TGAGCTTCAT GGGGATATGG AGCAAAAGAA GCGTATTGAG GTTATGGAAA ACTTTAGAGA TAAGCACTTT AAAGTTTTAG TTTGTACTGA TATAGCGGCT AGAGGAATTC ACGTAGATAG CATAGAACTT GTTATAAACT ATGAGGTTCC AATGGAAACA GAAAGCTATG TTCATAGAAT AGGAAGAACC GGTAGAGCAG GAAGAGAAGG AAAGGCTATT ACCTTTGTAA ATCATTATGA GAAGAAATAT TTAGAGAATG TTGAAGAATA TATTGGCTAT GAAATAAGAA AAGCAAGTCT TCCTTCTGAT GAAGAAGTTA AAGCTGGAAG AAAAATATTT AAGGAAAGTC AAAAGGTTCA ATTAAAAGAG AGTAAGAAAC CTAAGAAAGA AGTTCATGTT GATATAGTTA AAATACATGT TAATGGCGGA AAGAAAAAGA AAATAAGAGC CTTTGACATT GTTGGATGTT TTAGTAACTT ACCAGGTTTA ACAGGAGAAG ATATTGGAAT AATAGATGTT CAAGATGGTT TTTCTTATGT TGACATATTA AATGGAAAAG GTGATAAAGT TTTAAAGAGC TTTAAGGAAG TTACTATAAA GGGTAAAAAA GTGAAAATAC AAAAAGCAAG AAAATAA
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Protein sequence | MKFNELNLSD DIIKALNNLG YKNPSEVQEA SIPKLLKGED IIVKSQTGSG KTASFGIPVC EKINIEEKKV QCLVLTPTRE LAIQVKDELS NIGRIKKVRC AAIFGKQPFN EQIRELKQRV HIVVGTPGRV FDHMERGTLD LSEVNYVVID EADKMLSMGF IDQIKDILGE LRLNKTTALF SATFSKEIEE ICEEYMRNPM LLEVKSKVFN RDRIEESAIE IEEKNKGKAL WKCLYSYHPE SAIVFCNTRN KVKSVYKMLK DEGITCNELH GDMEQKKRIE VMENFRDKHF KVLVCTDIAA RGIHVDSIEL VINYEVPMET ESYVHRIGRT GRAGREGKAI TFVNHYEKKY LENVEEYIGY EIRKASLPSD EEVKAGRKIF KESQKVQLKE SKKPKKEVHV DIVKIHVNGG KKKKIRAFDI VGCFSNLPGL TGEDIGIIDV QDGFSYVDIL NGKGDKVLKS FKEVTIKGKK VKIQKARK
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